Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30414
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   2.6  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    27   3.4  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    27   4.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   7.9  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 375 PKTSEIRAVRGNKMKIDVIVCRISGQGITIGFEKFR*VIISPTNEVPLSENMSLGFPLRD 196
           P   E + V  + MK  + +  +S Q      +KF  VI  PT  V L  N ++ + L D
Sbjct: 648 PVDEETKGVSNDHMKDILRIYELSKQACFSRLQKFAFVIAQPTPTVELLPN-NVPYNLGD 706

Query: 195 IN 190
           +N
Sbjct: 707 LN 708


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 340 IPAYSPNFGGLWEAGVKSTKHH 405
           +P YSP  G  WE  V  T  H
Sbjct: 98  LPEYSPQMGNSWEIQVPMTTRH 119


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 217 RHIFRQRYLIRWRYNDLSKFLKANCDSLAADSAHDNINFHFIP 345
           +H+     L+RW  N L K  K   DS A + +    N   +P
Sbjct: 135 KHVLNDSGLLRWWVNCLEKLRKYYTDSEAPNDSEKQKNSTLLP 177


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 635 NPLITCEPGNRVFLKVPFGQGSERP 561
           N    C P  +V LK+P   GS  P
Sbjct: 497 NKFTVCRPHKKVTLKMPLNSGSSAP 521


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 734 NWHPSPFEGRNLSPMKWKLGPIVEVN 811
           NW     E  NL P ++++GP+   N
Sbjct: 84  NWEELKKEALNLCPSRFEVGPVYSAN 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,639,671
Number of Sequences: 5004
Number of extensions: 79708
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)