Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30414
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188     30   2.7  
07_01_1088 + 9995442-9997736                                           30   2.7  
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900...    30   2.7  
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505...    29   3.6  
02_01_0405 - 2952434-2955583                                           29   4.8  
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420...    29   4.8  
01_05_0741 - 24821208-24821220,24821476-24821711,24822276-248225...    29   6.3  

>07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188
          Length = 736

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
 Frame = +2

Query: 14  ESAAGVDYAGPVSC--ASRTGRGCRLIKSYIAIFVCFT--TKAVHLELVGNLTSNNYLLA 181
           E+   +D  GP +       G   R +  Y  +FV     +K +  + V  +T++     
Sbjct: 442 ETVEAMDIQGPFAVWGLDMVGPFKRAVGGYTHLFVAIDKFSKWIEAKPVITITADKARDF 501

Query: 182 LRRFISRRGKPRDIFSDNGTSFVG 253
               + R G P  I +DNGT F G
Sbjct: 502 FINIVHRFGVPNRIITDNGTQFTG 525


>07_01_1088 + 9995442-9997736
          Length = 764

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +2

Query: 47  VSCASRTGRGCRLIKSYIAIFVCFTTKAVHLELVGNLTSNNYLLA----LRRFISRRGKP 214
           V C S  G   RL++S I +FV    K +      N  S N L++    +RR I+R+GK 
Sbjct: 130 VFCKSWPGGDRRLLQSAILLFVPGILKCLEKPWALNRASINSLVSFDEKVRRTINRQGKQ 189

Query: 215 RDIFSDNGTSFVGDIMTYRNFSKP 286
            D   D   S  G      +  KP
Sbjct: 190 IDSIEDFVRSARGFFCGNDHLEKP 213


>04_02_0034 -
           8999618-9000358,9001439-9001618,9001666-9003621,
           9004647-9004786,9004871-9005282,9006399-9006638
          Length = 1222

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
 Frame = +2

Query: 59  SRTGRGCRLIKSYIAIFVCFTTKAVHLELVGNLTS-NNYLLALRRFISRRGKPRDIFSDN 235
           SRT R C     YI + V + +K V  +L     + ++  + L     R G PR + SD 
Sbjct: 78  SRTSRNCE----YILVAVDYVSKWVEAKLCSAADAKHDKNMFLEIIFPRFGTPRLVISDG 133

Query: 236 GTSFVGDIMTYRNFSKPIVIPWPLIRHTITSIFILFPRTALISEVFGRQV 385
           G  F+ +  T+R+  + +       +H + + +  +P+T+  +E   +Q+
Sbjct: 134 GLHFIDE--TFRHLLRDMG-----AKHNVATPY--YPQTSGQAETSNKQI 174


>09_04_0256 +
           16148820-16148998,16149547-16150241,16150317-16150573,
           16150668-16151349,16151423-16151626,16151715-16152449,
           16152533-16152698,16153253-16153400
          Length = 1021

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 446 SSPQHWFR-LRRSLTLDH*LLCIRPRRLNAAHARSFPYRPASHFPARKEL--SRTPYYQ 613
           S   H F  L RS   D     +RPR++    ARS    PA   PAR E+  SR P ++
Sbjct: 14  SGESHRFSPLSRSCAQDRRGDGVRPRQIRRLRARSAASAPARPVPARVEMSDSRDPVWE 72


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = -3

Query: 863 PFRVLNISQLWLTGQYPGLPRQWVPISTSWVKGFFLQKD*GANFQGILT*SPFYTLLELG 684
           P +VLNIS   L GQ+P     WV +              G       T SP+ ++LEL 
Sbjct: 155 PLQVLNISSNLLAGQFPS--STWVVMKNMVALNVSNNSFSGHIPANFCTNSPYLSVLELS 212

Query: 683 HVFLTPSSP 657
           +  L+ S P
Sbjct: 213 YNQLSGSIP 221


>01_03_0012 +
           11638363-11638476,11638854-11640678,11641855-11642096,
           11642198-11642327,11642464-11642774
          Length = 873

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 516 PEDLTPLTPGHFLIGRPLTSLPERNFQEHPITRLTR 623
           P D+ P+T GH +  R   +   R F E+ I ++TR
Sbjct: 32  PHDVDPMTNGHVVFQRVENNCSLRYFTENEIRQITR 67


>01_05_0741 -
           24821208-24821220,24821476-24821711,24822276-24822560,
           24822790-24822850,24823399-24823463,24823571-24823959,
           24824059-24824188
          Length = 392

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 639 QIRQHFWTRWCKEYVAQLQQRIK 707
           Q+  H W +W K Y+ Q+  +IK
Sbjct: 294 QLPPHVWEQWSKPYIKQIVNKIK 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,484,544
Number of Sequences: 37544
Number of extensions: 513491
Number of successful extensions: 1208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)