Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30414
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 52 7e-07
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 51 9e-07
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 51 9e-07
AC093703-4|AAY55885.1| 345|Caenorhabditis elegans Hypothetical ... 37 0.016
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF067619-1|AAC17568.2| 368|Caenorhabditis elegans Hypothetical ... 29 4.3
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 28 7.5
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 28 7.5
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 28 7.5
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 28 7.5
Z81544-4|CAB04431.2| 329|Caenorhabditis elegans Hypothetical pr... 28 9.9
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 51.6 bits (118), Expect = 7e-07
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +2
Query: 11 FESAAGVDYAGPVSCASRTGRGCRLIKSYIAIFVCFTTKAVHLELVGNLTSNNYLLALRR 190
FE+ G+DY GP++ G + + C TT+ H+ELV ++ ++ A+RR
Sbjct: 903 FENT-GLDYFGPMTFRKEDGS---TESCWGCVLSCATTRLTHIELVQQCSTKAFINAIRR 958
Query: 191 FISRRGKPRDIFSDNGTSF 247
F+S RG P I SDN F
Sbjct: 959 FVSERGIPDRIVSDNAPQF 977
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 51.2 bits (117), Expect = 9e-07
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +2
Query: 26 GVDYAGPVSCASRTGRGCRLIKSYIAIFVCFTTKAVHLELVGNLTSNNYLLALRRFISRR 205
G+DY GP++ ++ K+Y+ I+ C T+A LEL+ + T+ ++ +L +R
Sbjct: 1804 GLDYLGPIAYKNKDTH----FKAYVLIYTCLVTRAAKLELIPDGTTARFIESLGIIFNRV 1859
Query: 206 GKPRDIFSDNGTSFV 250
G P I+SDN +F+
Sbjct: 1860 GVPETIYSDNAQTFL 1874
Score = 45.2 bits (102), Expect = 6e-05
Identities = 31/102 (30%), Positives = 48/102 (47%)
Frame = +1
Query: 292 DSLAADSAHDNINFHFIPAYSPNFGGLWEAGVKSTKHHLNRVLGNCNLTFEELTTALVQI 471
++L + A +I F I +P GG++E V K + + +G L F L L
Sbjct: 1891 ETLTSFLATKDIEFRHITPLAPWQGGIYERLVGLVKAQIIKAIGKNILDFHSLRYVLSGA 1950
Query: 472 EAILNSRPLTPLYQTQKT*RRSRQVISLSAGLSLPCPKGTFK 597
EA++NSRPLTP + R L+ G+ L PK + +
Sbjct: 1951 EAMINSRPLTPNPNSPDDMIAIRPQDFLNPGVLLEVPKNSIR 1992
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 51.2 bits (117), Expect = 9e-07
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +2
Query: 26 GVDYAGPVSCASRTGRGCRLIKSYIAIFVCFTTKAVHLELVGNLTSNNYLLALRRFISRR 205
G+DY GP++ ++ K+Y+ I+ C T+A LEL+ + T+ ++ +L +R
Sbjct: 1804 GLDYLGPIAYKNKDTH----FKAYVLIYTCLVTRAAKLELIPDGTTARFIESLGIIFNRV 1859
Query: 206 GKPRDIFSDNGTSFV 250
G P I+SDN +F+
Sbjct: 1860 GVPETIYSDNAQTFL 1874
Score = 45.2 bits (102), Expect = 6e-05
Identities = 31/102 (30%), Positives = 48/102 (47%)
Frame = +1
Query: 292 DSLAADSAHDNINFHFIPAYSPNFGGLWEAGVKSTKHHLNRVLGNCNLTFEELTTALVQI 471
++L + A +I F I +P GG++E V K + + +G L F L L
Sbjct: 1891 ETLTSFLATKDIEFRHITPLAPWQGGIYERLVGLVKAQIIKAIGKNILDFHSLRYVLSGA 1950
Query: 472 EAILNSRPLTPLYQTQKT*RRSRQVISLSAGLSLPCPKGTFK 597
EA++NSRPLTP + R L+ G+ L PK + +
Sbjct: 1951 EAMINSRPLTPNPNSPDDMIAIRPQDFLNPGVLLEVPKNSIR 1992
>AC093703-4|AAY55885.1| 345|Caenorhabditis elegans Hypothetical
protein Y20F4.8 protein.
Length = 345
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 397 KHHLNRVLGNCNLTFEELTTALVQIEAILNSRPLTP 504
K+ L +VLG +T EL T +++ E I+NSRP+TP
Sbjct: 36 KNVLYKVLGKQVVTILELETLVIETEGIINSRPITP 71
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 693 GVGPRIPYTIESKNAGVSVQSSDNV 619
GVG RIP + + AG S QSS NV
Sbjct: 164 GVGSRIPKISDREGAGTSGQSSSNV 188
>AF067619-1|AAC17568.2| 368|Caenorhabditis elegans Hypothetical
protein K03E5.3 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 182 LRRFISRRGKPRDIF-SDNGTSFVGDIMTYRNFSKP 286
LRR + R KP++I SD+G + D RNFS P
Sbjct: 163 LRRIVHRDLKPQNILVSDSGVIKIADFGLARNFSFP 198
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 259 NDLSKFLKANCDSLAADSAHDNINFHF 339
N+ SKFL A+ S A ++ D+ N+HF
Sbjct: 146 NEYSKFLAAHAGSSNAYTSSDHTNYHF 172
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 259 NDLSKFLKANCDSLAADSAHDNINFHF 339
N+ SKFL A+ S A ++ D+ N+HF
Sbjct: 87 NEYSKFLAAHAGSSNAYTSSDHTNYHF 113
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 259 NDLSKFLKANCDSLAADSAHDNINFHF 339
N+ SKFL A+ S A ++ D+ N+HF
Sbjct: 146 NEYSKFLAAHAGSSNAYTSSDHTNYHF 172
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 259 NDLSKFLKANCDSLAADSAHDNINFHF 339
N+ SKFL A+ S A ++ D+ N+HF
Sbjct: 146 NEYSKFLAAHAGSSNAYTSSDHTNYHF 172
>Z81544-4|CAB04431.2| 329|Caenorhabditis elegans Hypothetical
protein F49C5.2 protein.
Length = 329
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 713 IMSVFPENWHPSPFEGRNLSPMKWKLGPIVEVNLGTDQLTRV 838
+M +P +W + G+ + W +GP+ ++ L T+++T V
Sbjct: 83 LMDGYPNHWL-NAIMGQLIGWFGWSIGPLSQILLATNRITAV 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,921,097
Number of Sequences: 27780
Number of extensions: 438243
Number of successful extensions: 985
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -