Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30413
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    27   0.12 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.50 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.0  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   2.0  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   2.7  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   3.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.2  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 246 LTSPNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPII 425
           LTSP   S   P KP T        +++P + +SS  ST +   +  +  ++    PP I
Sbjct: 143 LTSPLSVSTSPPGKPATSTTSQ--NLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQI 200

Query: 426 F 428
           +
Sbjct: 201 Y 201


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 521 IRNEPINKPQPARIQPLSNRPQRP 592
           + N P  KP+P ++     RP RP
Sbjct: 247 LENPPTPKPRPTKVSRRKPRPPRP 270


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 324 NTPTAFSSSGYS-TPEPQNDFYDITTTSQPKPPIIFNPFPQSSPSPVKLDP 473
           +T  A    G+  TP P     D TT+ +P P I   P P    SP+  +P
Sbjct: 57  STSAAADVDGWQVTPLPS----DGTTSPEPDPEIPVAPEPAPLASPLVQEP 103


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 76  QNDSPIPP--RLQIPGAIPVGGPVRQGGFRQGRIAPVPGSI 192
           QN++P+P   R+ +P  +  G P   GG +     P PGS+
Sbjct: 108 QNNNPLPSPRRVAVPVLVRDGKPCLSGGPKH----PDPGSL 144


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 258 NLQSLDEPAKPVTEEPEDEYEINTPTAFSSSG-YSTPEPQNDFYDITTTSQPKPPIIFNP 434
           N  S+ EP    T  PE     +TP+A  S    +TP+P     + +T++  +   +   
Sbjct: 395 NSYSVPEPTISTTPRPEWARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVST- 453

Query: 435 FPQSSPSPVKLDP 473
             ++ P+P   +P
Sbjct: 454 -TEAPPAPAVSNP 465


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 48  YAVCFNSLCTK*LSYSTETTNTRSHSC 128
           Y  C+N   T+ L       N R+HSC
Sbjct: 115 YWTCWNGTATEQLCIGGLLYNERTHSC 141


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 431 PVPTIFS*PCQARSHPSHAIQTVFTHPFNPIRNEPIN 541
           P+P  F+ P     HP H       +P +P R   ++
Sbjct: 30  PLPRHFNPPSDKLHHPIHQTVIYHNNPRDPNRARSVS 66


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +3

Query: 285 KPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKP 416
           +P  +EP D+YE +    +  S  +   P   F D+   +   P
Sbjct: 89  RPPPDEPIDDYEPSFDLFYYPSRQTLYTPVQYFKDLVAEAYVSP 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,364
Number of Sequences: 336
Number of extensions: 4300
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)