Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30413
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.73 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    29   0.96 
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    28   1.3  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    27   2.2  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.2  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    27   2.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.9  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    27   3.9  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.9  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   5.1  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    26   5.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   6.8  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   6.8  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   6.8  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.8  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    25   9.0  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   9.0  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   9.0  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 658 HKTQEPIRAPVRNTQQKYSPTNTREKEP 741
           HKT EP+R  V +  +K  P+ T  K P
Sbjct: 24  HKTGEPVRYEVEDDLRKLKPSRTAPKPP 51


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 285 KPVTEEPEDEYEINTP-TAFSSSGYSTPEPQNDFYDITTTSQ 407
           +P    P    E+N P T+  +  YS PEP  DF+   T  Q
Sbjct: 290 QPTGTSPSPPVEMNFPDTSDITPAYSEPEPIQDFWSDPTLDQ 331


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 276  EPAKPVTEEPEDEYEIN--TPTAFSSSGYSTPEPQNDFYDI-TTTSQPKPP 419
            EP+ P +  P   +     TP+AF++S   +P P    +++ ++ SQ   P
Sbjct: 1095 EPSNPASNPPSTGFSFGAATPSAFNASASQSPAPNGIQFNLGSSNSQTNAP 1145


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 619 KRLSFRPEYRSLRSIGKWLNSGRLRFVNWFVSDRVERVGEDGLYCVGRMGS 467
           K LSF P  RSL + G   +   +RF N F   ++     D LYC  ++ S
Sbjct: 368 KALSFCPWQRSLLATGAGSHDKHIRFYNCFNGKKI-----DELYCGAQITS 413


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 340 FRPAATLHPNLKMTSTTSPPLLSQNHP*SLTRS 438
           F P AT  PN   TST +PP  +  +P +L  S
Sbjct: 222 FSPFATSSPNFLSTSTPAPPNSNNANPSTLFSS 254


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 595 YRSLRSIGKWLNSGRLRFVNWFVSDRVERVGEDGLY-CV 482
           Y+  +SI  WL +  +     F   R +R   DGLY C+
Sbjct: 128 YKQYKSIEPWLQNDNIPKDKEFYQSRADRAKLDGLYECI 166


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 25/121 (20%), Positives = 47/121 (38%)
 Frame = +3

Query: 87  SYSTETTNTRSHSCRRTSQARRLQARKDSTGAWFNS*SKKTRICQTVF*IRGCLTSPNLQ 266
           S ST TT + S S   +S +    +   S+ +  +S S  +    +        +S +  
Sbjct: 146 SSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SSSSSSSSSS 201

Query: 267 SLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQS 446
           S    + P+T      +  ++ ++ SSS  S P   + F    ++S     +   P   S
Sbjct: 202 SSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSS 261

Query: 447 S 449
           S
Sbjct: 262 S 262


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 276 EPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYD 389
           EP    +   ED+ +IN P +  SS  S+P+  +  Y+
Sbjct: 67  EPPSEHSSNGEDDKDINNPPSMPSSVCSSPKSPHRHYE 104


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +2

Query: 455 PCQARSHPSHAIQTVFTH--------PFNPIRNEPINKPQPARIQPLSNRPQRP 592
           P    SHPS+ +Q+  ++        PF    + P++ P P   QP+   P  P
Sbjct: 106 PHDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQPVLRPPPVP 159


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 529 VSDRVERVGEDGLYCVGRMGSSLTGL 452
           V +  ERV +D +Y VG  G+ LTGL
Sbjct: 510 VCEERERVTDDIVYEVGETGALLTGL 535


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 252 SPNLQSLDEPAKPVTEEPEDEYEINTPTAFS 344
           +P+ Q L+E  +   EEPEDE++I+  T  S
Sbjct: 338 APDFQELEENIE--YEEPEDEFDIHDETGKS 366


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 345 SSGYSTPEPQNDFYDITTTSQPKPPII-FNPFPQSSPSPVKLDPIR 479
           S   S+   +ND   ++ T+   P I   +P P +SP P+ ++P++
Sbjct: 563 SKSSSSKHKENDKASVSITTTTTPSITPADPVP-TSPKPLAIEPVK 607


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 336 AFSSSGYSTPEPQNDFYDITT----TSQPKPPIIFNPFPQSSP 452
           AF SS +S P  + D    +T    T+  KP  IFN  P S+P
Sbjct: 231 AFLSSYFSPPNAEFDSTFCSTLSSLTNSEKPTYIFNFKPNSTP 273


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 476 PSHAIQTVFTHPFNPIRNEPINKPQPARIQPLSNRP 583
           P HA+Q +        R  P+   +P  + PL+N P
Sbjct: 14  PKHALQAIVLSDSYNYRFRPLTLDKPRCLLPLANTP 49


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 300 EPEDE---YEINTPTAFSSSGYSTPEPQNDFYDITTTSQPK 413
           EP+D    +++N     S+ GYST EP+++F     T+ P+
Sbjct: 206 EPKDSQFNHDVNLMQG-SAPGYSTVEPEDNFASEIQTNAPE 245


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 181 PGSIPRVRRPGFARPSFKSVDASPRQIFSHLMNLRNLLLK 300
           PG++ R+  P    P+F S+ A+  Q F   ++  + L+K
Sbjct: 198 PGTVCRLVLPSILSPAFYSIRATHPQHFIRFIHTLSSLIK 237


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 172 APVPGSIPRVRRPGFARPSFKSVDASPRQIFSHLMNLRNLLL 297
           AP P  IP  ++  F +     +  SP    SHLM + N++L
Sbjct: 73  APSPLDIPEEQKALFRQNILPVLLQSPMSTRSHLMAILNIIL 114


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
 Frame = +3

Query: 258 NLQSLDEPAKPVTEE-PEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNP 434
           NLQ     A P     P    + N P   S S   +P P       T  SQP P    + 
Sbjct: 261 NLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQFSSSF 320

Query: 435 FPQSSPSPVKLDP 473
            P +S     L P
Sbjct: 321 VPGTSSIVPTLHP 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,668
Number of Sequences: 5004
Number of extensions: 71413
Number of successful extensions: 305
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)