Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30413
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40942-4|AAC47069.2| 486|Caenorhabditis elegans Hypothetical pr... 35 0.073
U40942-3|AAU05564.1| 487|Caenorhabditis elegans Hypothetical pr... 35 0.073
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 0.68
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 30 2.1
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 30 2.1
U00034-1|AAA50639.2| 566|Caenorhabditis elegans Pim (mammalian ... 30 2.1
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 29 2.7
U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z83116-9|CAD89748.1| 374|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC006626-3|AAF39789.1| 295|Caenorhabditis elegans Hypothetical ... 29 3.6
AC006626-2|AAK68157.1| 318|Caenorhabditis elegans Hypothetical ... 29 3.6
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 4.8
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 29 4.8
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 29 4.8
AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical ... 29 4.8
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 29 4.8
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 29 4.8
AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical ... 29 4.8
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 28 6.3
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr... 28 6.3
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 6.3
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 6.3
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 6.3
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 6.3
Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z67755-4|CAA91757.1| 336|Caenorhabditis elegans Hypothetical pr... 28 8.4
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 28 8.4
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 28 8.4
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 28 8.4
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 8.4
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 28 8.4
AF045638-2|AAC02560.1| 110|Caenorhabditis elegans Hypothetical ... 28 8.4
AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical... 28 8.4
AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical ... 28 8.4
>U40942-4|AAC47069.2| 486|Caenorhabditis elegans Hypothetical
protein K02E10.4a protein.
Length = 486
Score = 34.7 bits (76), Expect = 0.073
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Frame = +3
Query: 270 LDEPAKPVTEEPEDEYEINT-------PTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIF 428
LD+PA T++P+ ++ + P Y P + TTT+ PPI+
Sbjct: 279 LDDPATTTTQQPKRGFQSISMSMRQPLPGKIHDGQYLKPTTTSSSTTTTTTTTAPPPIVD 338
Query: 429 NPFPQSSPSPV---KLDPIRPTQ 488
FPQ + + V + PIRP Q
Sbjct: 339 QEFPQIAINSVGVRRKGPIRPAQ 361
>U40942-3|AAU05564.1| 487|Caenorhabditis elegans Hypothetical
protein K02E10.4b protein.
Length = 487
Score = 34.7 bits (76), Expect = 0.073
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Frame = +3
Query: 270 LDEPAKPVTEEPEDEYEINT-------PTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIF 428
LD+PA T++P+ ++ + P Y P + TTT+ PPI+
Sbjct: 280 LDDPATTTTQQPKRGFQSISMSMRQPLPGKIHDGQYLKPTTTSSSTTTTTTTTAPPPIVD 339
Query: 429 NPFPQSSPSPV---KLDPIRPTQ 488
FPQ + + V + PIRP Q
Sbjct: 340 QEFPQIAINSVGVRRKGPIRPAQ 362
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 31.5 bits (68), Expect = 0.68
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = +2
Query: 422 NL*PVPTIFS*PCQARSHPSHAIQTVFTHPFNPIRNEPINKPQPARIQPLSNRPQRPIFR 601
N P PT + R HP T P+ P R P + QP P QRP FR
Sbjct: 1979 NTAPQPTTYQ-----RPHPIKVQVRPATKPYRP-RPSPAPRIQPRPYNPQPVVVQRPQFR 2032
Query: 602 PETKP 616
P+ +P
Sbjct: 2033 PQPQP 2037
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 246 LTSPNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGY-STPEPQNDFYDITTTSQPKPPI 422
L P + P P + P ++ I+T T++SS+ +TP+P + P P
Sbjct: 423 LVEPKTPTRVAPPPPPSAPPTIKFPISTGTSYSSTTPPTTPKP----------APPPPSR 472
Query: 423 IFNPFPQSSPSPVKLDPIRP 482
I NP P P+ V P P
Sbjct: 473 IPNPSPSPQPAEVSKSPPPP 492
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 246 LTSPNLQSLDEPAKPVTEEPEDEYEINT--PTAFSSSGYSTPEPQNDFYDITTTSQPKPP 419
+T+P QS + T ED+ +T PT+ S+S ST P + +TTSQ P
Sbjct: 330 ITTPMEQSSTVSSVQKTRTSEDKPSSSTTVPTSASTSESSTSSPMAETSSSSTTSQSSPA 389
Query: 420 IIFNPFPQSS 449
+ P+SS
Sbjct: 390 ST-STVPESS 398
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 509 PFNPIRNEPINKPQPARIQPLSNRPQRPIF--RPETK-PFVXXXXXIQPVRQYTRLRSQS 679
PF PI +PI QP + +P RPQ P F P T+ PF P R ++
Sbjct: 191 PFRPI--QPIQPQQPFQPRPFQPRPQ-PAFTQAPFTQAPFTQAPFTRPPFRPQPNFATRP 247
Query: 680 APPLETHNRNTAQLIPEKRNQSLK 751
A P + A P + Q+L+
Sbjct: 248 AQP-QPAPTTPAPRFPPQSGQNLR 270
>U00034-1|AAA50639.2| 566|Caenorhabditis elegans Pim (mammalian
oncogene) relatedkinase protein 1, isoform a protein.
Length = 566
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Frame = +3
Query: 264 QSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPII------ 425
+S D PV+E T +A S YS E + + +QP PP +
Sbjct: 459 KSFDTELDPVSENDHQPLIPETSSATCQSTYSNDEDVTISEKVVSPAQPLPPPLSPRKGS 518
Query: 426 ---FNPFPQSSPSPVKLDPIRPTQY 491
F P+S S +++ RP Q+
Sbjct: 519 LQCFESVPRSRDSVIRMSRHRPLQF 543
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +2
Query: 518 PIRNEPINKPQPARIQPLSNRPQRPIFRPETKPFVXXXXXIQPVRQYTRLRSQSAPPLET 697
P R P +P A+ QP RPQ P RP P I+P Q R + + T
Sbjct: 226 PARPAPYIEPSTAKPQP---RPQPPRTRPYVAPSTTTQRYIEPTTQRPTTRRATTKRITT 282
>U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical
protein K02F3.5 protein.
Length = 308
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 324 NTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSS 449
NTP A + YS P P + Y + S +PP+ P PQ S
Sbjct: 78 NTPQADYGNPYSYPRPYSRTYHRNSISPIRPPVPM-PIPQIS 118
>Z83116-9|CAD89748.1| 374|Caenorhabditis elegans Hypothetical
protein M01B2.11 protein.
Length = 374
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 395 GDVVEV-ILRFGCRVAAGRKSCRSVNFVFIFWFFSNRFRRFIK*LKIWR 252
GD + + I+ ++ ++ S++ VF+ +F S +++ +K L WR
Sbjct: 305 GDAISIKIITTALTISNNLRTLNSISNVFVCYFMSVQYKNAVKSLAFWR 353
>AC006626-3|AAF39789.1| 295|Caenorhabditis elegans Hypothetical
protein CC8.2a protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 339 FSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSS 449
FS+ STP PQ + +QP P ++ + FP S
Sbjct: 86 FSTPSSSTPPPQLPHFPKQLINQPAPRLVLHNFPYRS 122
>AC006626-2|AAK68157.1| 318|Caenorhabditis elegans Hypothetical
protein CC8.2b protein.
Length = 318
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 339 FSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSS 449
FS+ STP PQ + +QP P ++ + FP S
Sbjct: 109 FSTPSSSTPPPQLPHFPKQLINQPAPRLVLHNFPYRS 145
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 273 DEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSSP 452
DEPA+P+ ++ N +SS ++PEP ++ + + PP P P++ P
Sbjct: 433 DEPAEPIAQKAAAPVSPNP----ASSRSASPEPAQQVDELLESEEAAPPPPPPPPPENEP 488
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 455 PCQARSHPSHAIQTVFTHPFNPIRNEP---INKPQPARIQPLSNRPQRPIFRPETKPFVX 625
P Q + P+ + P +N+ + PQ ++IQ N PQ+ P+ P +
Sbjct: 458 PQQMQQQPAQNLMMNMGQQMRPPQNQAPQMMQNPQQSQIQMRGNPPQQMRGMPQQGPPMQ 517
Query: 626 XXXXIQPVRQYTRLRSQSAPPLETHNRNTAQ 718
QP Q +++R Q P + N N+ Q
Sbjct: 518 QSQ--QPPPQMSQMRMQQQQP-QQPNMNSPQ 545
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 276 EPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPK 413
E ++ EP+DEY+ + S +G S P+ + D +PK
Sbjct: 485 ESSEGTGSEPDDEYDSGSEQDSSGTGESEPDSEQDVPSKRRKGEPK 530
>AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical
protein Y116A8A.6 protein.
Length = 456
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +2
Query: 515 NPIRNEPINKPQPARIQPLSNRPQRPIFRPETKPFVXXXXXIQPVRQYTRLRSQSAPPLE 694
+PI ++P +P+ +Q S P+ +PE+ +P Q T P L
Sbjct: 322 SPISSKPATTTEPSPLQASSKPATEPLLQPESARTASSSASSKPEVQTTIPTEIQTPSLR 381
Query: 695 THNRNTAQLI 724
T + T+ +
Sbjct: 382 TSSLKTSTTV 391
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 306 EDEYEINTPTAFSSSGYSTP-EPQNDFYDITTTSQPKPPIIFNPFPQSSPS 455
+DE + + P F+ P + +D YD+ TS+ PP NP + PS
Sbjct: 202 DDEEDDDGPADFTDMPLLKPVDEDDDCYDVPCTSEGPPPNNSNPAITTIPS 252
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 306 EDEYEINTPTAFSSSGYSTP-EPQNDFYDITTTSQPKPPIIFNPFPQSSPS 455
+DE + + P F+ P + +D YD+ TS+ PP NP + PS
Sbjct: 202 DDEEDDDGPADFTDMPLLKPVDEDDDCYDVPCTSEGPPPNNSNPAITTIPS 252
>AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical
protein F54A3.4 protein.
Length = 755
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 212 PGLLTLGIEPGTGAILPCLKPPCLTGPPTGMAPGICSLGGIGESFCA*AVKANSIE 45
P + +G++P G+IL TGP TG AP + GIG F + S++
Sbjct: 538 PNAIVVGVDPN-GSIL--------TGPTTGPAPDFYEVEGIGYDFIPGTLDEKSVD 584
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Frame = +1
Query: 94 PPRLQIPGAIPVG------GPVRQGGFRQGRIAPVPGSIPRVRRPGFARP 225
PP Q+PG+ P G GP F G APV +P PG P
Sbjct: 243 PPGPQVPGSYPSGPADIPQGPGMPRAFPPGASAPVAPGMPGAFPPGQGGP 292
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 86 LLFHRDYKYQEPFLSEDQSGKAA 154
L +HRD +YQ P + ED +G+ A
Sbjct: 2444 LNYHRDKRYQIPLVVEDATGRRA 2466
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 86 LLFHRDYKYQEPFLSEDQSGKAA 154
L +HRD +YQ P + ED +G+ A
Sbjct: 2444 LNYHRDKRYQIPLVVEDATGRRA 2466
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 86 LLFHRDYKYQEPFLSEDQSGKAA 154
L +HRD +YQ P + ED +G+ A
Sbjct: 2444 LNYHRDKRYQIPLVVEDATGRRA 2466
>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
protein C50F2.2 protein.
Length = 1029
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 509 PFNPIRNEPINKPQPARIQP--LSNRPQRPIFRPETKP 616
P NPI +N QP++ +P L+ P+RP PET P
Sbjct: 311 PTNPI----VNSKQPSQKKPADLTPHPKRPPITPETLP 344
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 255 PNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFN- 431
P + D PAKPV+ PE E + TP + + P+ + ++ S P +
Sbjct: 675 PPWEDDDAPAKPVSL-PEPEKK--TPV-LAKKAPTKPDSEAAADPVSGPSSKDPKLAKKA 730
Query: 432 PFPQSSPSPVKLDPIRP 482
P PSP+K PI+P
Sbjct: 731 PVKPRDPSPMKAVPIKP 747
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 285 KPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSSPSPV 461
+P+ E ED Y + T G P D+Y IT + P + + P +S P P+
Sbjct: 1386 RPMVEYCEDIYWTHR-TGQLPPGLQVPRRPYDYYHITERTPPPEDLNWVPPAESPPIPI 1443
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 285 KPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSSPSPV 461
+P+ E ED Y + T G P D+Y IT + P + + P +S P P+
Sbjct: 1386 RPMVEYCEDIYWTHR-TGQLPPGLQVPRRPYDYYHITERTPPPEDLNWVPPAESPPIPI 1443
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 285 KPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSSPSPV 461
+P+ E ED Y + T G P D+Y IT + P + + P +S P P+
Sbjct: 1386 RPMVEYCEDIYWTHR-TGQLPPGLQVPRRPYDYYHITERTPPPEDLNWVPPAESPPIPI 1443
>Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical
protein T16G1.2 protein.
Length = 407
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = +3
Query: 240 GCLTSPNLQSLDEPA-KPVTEEPEDEYEINTPTAF----SSSGYSTPEPQNDFYDITTTS 404
G +T P + P + E E+ + P F +++G + P QN +
Sbjct: 150 GEITEPMTTTTQMPEHNSINEIRENSIQPVRPKTFFQTVTANGSNAPPNQNAQLPL---- 205
Query: 405 QPKPPIIFNPFPQSSPSPVKLDPIRP 482
QP+PP++F P P +P + + P
Sbjct: 206 QPQPPLVFTPQPPIAPPTFTMPSLVP 231
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = +3
Query: 270 LDEPAKPVTEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSS 449
L EP +P T P+ P + P D Y+ ++P PP P P +
Sbjct: 426 LTEPDEPSTYTPKPIAYEPEPMVYKPEAMK-PAVSYDAYE-EPPAEPAPPTFLAPTPVIA 483
Query: 450 PSPVKLDPIRPTQY 491
P P + P P+ Y
Sbjct: 484 PPPPEPTP-APSHY 496
>Z67755-4|CAA91757.1| 336|Caenorhabditis elegans Hypothetical
protein F54F7.4 protein.
Length = 336
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 351 GYSTPEPQNDFYDITTTSQPKPPIIFNPFPQSSPSPVKL 467
G P D+Y+I P PP FN P + P P+++
Sbjct: 259 GLVVPRRPLDYYNIIPNLSP-PPEDFNWIPPNEPPPIEI 296
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Frame = +3
Query: 345 SSGYSTPEPQNDFYDITTTSQPKPPIIFN--------PFPQSSPSPVKLDP 473
+S Y+ P P + S P PII N P P P PV+L P
Sbjct: 108 ASPYNPPPPSSQVIRSVNASPPTAPIIHNKMIIREDIPAPPRPPPPVELSP 158
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Frame = +3
Query: 345 SSGYSTPEPQNDFYDITTTSQPKPPIIFN--------PFPQSSPSPVKLDP 473
+S Y+ P P + S P PII N P P P PV+L P
Sbjct: 749 ASPYNPPPPSSQVIRSVNASPPTAPIIHNKMIIREDIPAPPRPPPPVELSP 799
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Frame = +3
Query: 345 SSGYSTPEPQNDFYDITTTSQPKPPIIFN--------PFPQSSPSPVKLDP 473
+S Y+ P P + S P PII N P P P PV+L P
Sbjct: 749 ASPYNPPPPSSQVIRSVNASPPTAPIIHNKMIIREDIPAPPRPPPPVELSP 799
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3
Query: 246 LTSPNLQSLDEPAKPVTEEPEDEYEINTPTAFSSSGY-STPEPQNDFYDITTTSQPKPPI 422
L P + P P + P ++ I+T ++SS+ +TP+P + P P
Sbjct: 430 LVEPKTPTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKP----------APPPPSR 479
Query: 423 IFNPFPQSSPSPVKLDPIRP 482
I NP P P+ V P P
Sbjct: 480 IPNPSPSPQPAEVSKSPPPP 499
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Frame = +3
Query: 345 SSGYSTPEPQNDFYDITTTSQPKPPIIFN--------PFPQSSPSPVKLDP 473
+S Y+ P P + S P PII N P P P PV+L P
Sbjct: 749 ASPYNPPPPSSQVIRSVNASPPTAPIIHNKMIIREDIPAPPRPPPPVELSP 799
>AF045638-2|AAC02560.1| 110|Caenorhabditis elegans Hypothetical
protein C35B1.4 protein.
Length = 110
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 294 TEEPEDEYEINTPTAFSSSGYSTPEPQNDFYDITTTSQPKPPIIF 428
T EPE +T SG+ T EP+ + T P+PP+ F
Sbjct: 63 TWEPEASGFPSTDGEQEWSGFPTIEPEASEFSTTEKEPPRPPLPF 107
>AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical
protein Y24D9A.1b protein.
Length = 487
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 264 QSLDEPAKPVTEEPEDEYEINTPTAFSSSGYST--PEPQNDFYDITTTSQPKPPIIFNPF 437
+ L+E AK + P+D+ + P+ Y T PEP N + P PP +
Sbjct: 389 EKLEEAAK-IPSPPKDQKSL--PSIVEEDDYYTAPPEPANK-RRAHNLAPPPPPPVQVVT 444
Query: 438 PQSSPSPVKLDPIRP 482
PQ++ S + P+ P
Sbjct: 445 PQTTSSQTETGPLPP 459
>AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical
protein Y24D9A.1a protein.
Length = 670
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 264 QSLDEPAKPVTEEPEDEYEINTPTAFSSSGYST--PEPQNDFYDITTTSQPKPPIIFNPF 437
+ L+E AK + P+D+ + P+ Y T PEP N + P PP +
Sbjct: 389 EKLEEAAK-IPSPPKDQKSL--PSIVEEDDYYTAPPEPANK-RRAHNLAPPPPPPVQVVT 444
Query: 438 PQSSPSPVKLDPIRP 482
PQ++ S + P+ P
Sbjct: 445 PQTTSSQTETGPLPP 459
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,978,775
Number of Sequences: 27780
Number of extensions: 430272
Number of successful extensions: 1926
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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