Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30412
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    23   3.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.5  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    22   7.3  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    22   7.3  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    22   7.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   9.6  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   9.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   9.6  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 344 VFDTTKKVLVEFYAPWCGHCKQLVPIYDKLGE 439
           V D    +  +F+A W G   +  P+Y  + E
Sbjct: 193 VLDIINVMTYDFHAMWAGFTAENSPLYGGVNE 224


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 163  LNKTWPNTSPAVMSCRLTLLRNSFNRSSTAPEAASAER 276
            LN    N    V+S RLT+ R +         +  AER
Sbjct: 1445 LNANGTNAGTPVLSRRLTMRRETMKALEVRVNSVMAER 1482


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 163  LNKTWPNTSPAVMSCRLTLLRNSFNRSSTAPEAASAER 276
            LN    N    V+S RLT+ R +         +  AER
Sbjct: 1445 LNANGTNAGTPVLSRRLTMRRETMKALEVRVNSVMAER 1482


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 163  LNKTWPNTSPAVMSCRLTLLRNSFNRSSTAPEAASAER 276
            LN    N    V+S RLT+ R +         +  AER
Sbjct: 1445 LNANGTNAGTPVLSRRLTMRRETMKALEVRVNSVMAER 1482


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 163  LNKTWPNTSPAVMSCRLTLLRNSFNRSSTAPEAASAER 276
            LN    N    V+S RLT+ R +         +  AER
Sbjct: 1445 LNANGTNAGTPVLSRRLTMRRETMKALEVRVNSVMAER 1482


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 376 FDEDLLSCVEDDFVKVGGDEHFDGFG 299
           FDE L  C+++ ++ +     F  FG
Sbjct: 148 FDELLFKCMKEKWIPLCNSVTFSNFG 173


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 376 FDEDLLSCVEDDFVKVGGDEHFDGFG 299
           FDE L  C+++ ++ +     F  FG
Sbjct: 381 FDELLFKCMKEKWIPLCNSVTFSNFG 406


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 376 FDEDLLSCVEDDFVKVGGDEHFDGFG 299
           FDE L  C+++ ++ +     F  FG
Sbjct: 381 FDELLFKCMKEKWIPLCNSVTFSNFG 406


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +2

Query: 587 PASPSSLRPTVKAPSQYLL*PNSKRRKMCLPETSYKHFGR 706
           P SP+S +    +P   L     K    C P   Y  F R
Sbjct: 218 PDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPYVPFYR 257


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 344 VFDTTKKVLVEFYAPWCGHCKQLVPIY 424
           V D    +  +F+  W G   Q  P+Y
Sbjct: 192 VLDVINVMTYDFHGSWAGVTAQNSPLY 218


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 102 RILEFFGMKKDEVPSARLIALEQDMAKYKPSS-NELSPNAIEEFVQSFFDGT*SSIC*AR 278
           R ++F   +K++V + +    E  M+    SS N  SP A  +F+ + F G+   +    
Sbjct: 136 RRMKFKKEEKNKVVTPKTSPNEASMSPQSTSSNNSASPKAC-QFLYNQFPGSSQVVVKDE 194

Query: 279 TC 284
           TC
Sbjct: 195 TC 196


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 102 RILEFFGMKKDEVPSARLIALEQDMAKYKPSS-NELSPNAIEEFVQSFFDGT*SSIC*AR 278
           R ++F   +K++V + +    E  M+    SS N  SP A  +F+ + F G+   +    
Sbjct: 156 RRMKFKKEEKNKVVTPKTSPNEASMSPQSTSSNNSASPKAC-QFLYNQFPGSSQVVVKDE 214

Query: 279 TC 284
           TC
Sbjct: 215 TC 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,410
Number of Sequences: 336
Number of extensions: 2997
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)