Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30412
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 100 5e-22
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 73 4e-14
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 48 1e-06
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 39 8e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 38 0.002
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 36 0.008
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 33 0.053
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 31 0.28
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 29 0.66
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 28 2.0
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 2.0
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 27 2.7
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 27 3.5
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 6.1
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 6.1
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 26 8.1
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 8.1
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 99.5 bits (237), Expect = 5e-22
Identities = 43/82 (52%), Positives = 60/82 (73%)
Frame = +2
Query: 254 LKQHLLSEDLPADWAAKPVKVLVAANFDEVVFDTTKKVLVEFYAPWCGHCKQLVPIYDKL 433
L+ + S+ +P + + + VLVA NFD++V D TK VLVEFYAPWCGHCK L P Y+KL
Sbjct: 341 LQPKIKSQPIPE--SQEDLVVLVADNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKL 398
Query: 434 GEHFENDDDVIIAKIDATANEL 499
E + +D +V++AKIDAT N++
Sbjct: 399 AEEYSDDSNVVVAKIDATENDI 420
Score = 51.2 bits (117), Expect = 2e-07
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 359 KKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDAT 487
K ++V+FYAPWCGHCK L P Y+ + E D + + ++D T
Sbjct: 40 KVLMVKFYAPWCGHCKALAPEYESAADELEK-DGISLVEVDCT 81
Score = 34.3 bits (75), Expect = 0.023
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +1
Query: 511 ITSFPTIKLYSKDNQVHD--YNGERTLAGLTKFVETDGEGAEPVPSVTEFEEEEDVPARD 684
I+ FPTI + +++V+ Y G+RTL L+ F++ EP+ +E+E VPA D
Sbjct: 424 ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHA-SFEPIK-----KEKESVPAPD 477
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 505 HQITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV 606
+ I +PT+ ++ Q+ Y+G R L K++
Sbjct: 90 YSIRGYPTLNVFKNGKQISQYSGPRKHDALVKYM 123
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 73.3 bits (172), Expect = 4e-14
Identities = 32/56 (57%), Positives = 42/56 (75%)
Frame = +2
Query: 317 LVAANFDEVVFDTTKKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDA 484
L + NFD+VV D K VLVEFYA WCG+CK+L P Y+ LG+ F+N+ +V I KI+A
Sbjct: 145 LDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINA 200
Score = 67.3 bits (157), Expect = 3e-12
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 293 WAAKPVKVLVAANFDEVVFDTTKKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIA 472
+A+ V++ + + + K L+EFYA WCGHCK L P+Y++LG FE+ +DV+I
Sbjct: 18 FASGVVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIG 77
Query: 473 KIDA 484
KIDA
Sbjct: 78 KIDA 81
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 505 HQITSFPTIKLYSKDNQVHD--YNGERTLAGLTKFVETDGEGAEPVPSVTEFEEEEDVPA 678
H++ SFPTIK + KD++ Y G+R+L L +++ G + P T +P
Sbjct: 210 HEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKK-SGTQRSPDGTLLSTAGRIPT 268
Query: 679 RDE 687
DE
Sbjct: 269 FDE 271
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = +2
Query: 368 LVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDATAN 493
LV FYAPWCG+CK+LVP Y KL + + V DA N
Sbjct: 52 LVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQN 93
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Frame = +1
Query: 505 HQITSFPTIKLY---SKDNQVH--DYNGERTLAGLTKFV 606
+Q+ FPTIKL SK + + DYNG+R+ L KFV
Sbjct: 100 YQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFV 138
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 39.1 bits (87), Expect = 8e-04
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 359 KKVLVEFYAPWCGHCKQLVPIYDKLGE 439
K +V+FYA WCG CK L P +KL E
Sbjct: 36 KVTVVDFYADWCGPCKYLKPFLEKLSE 62
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 308 VKVLVAANFDEVVFDTTKKV-LVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKIDA 484
V++ F E++ + +++ L+ FYAPW CKQ+ ++D+ + +N + KI+A
Sbjct: 3 VEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKN---AVFLKIEA 59
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 359 KKVLVEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKID 481
K V+V+F+A WCG CK + P +++ + D K+D
Sbjct: 19 KLVVVDFFATWCGPCKAIAPKFEQFSNTY---SDATFIKVD 56
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 33.1 bits (72), Expect = 0.053
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 371 VEFYAPWCGHCKQLVPIYDKLGEHFENDDDVIIAKID 481
V+ YA WCG CK + P++ +L + + + AK++
Sbjct: 24 VDCYADWCGPCKAISPLFSQLASKYAS-PKFVFAKVN 59
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 30.7 bits (66), Expect = 0.28
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 371 VEFYAPWCGHCKQLVPIYDKLGE 439
+++Y P CG CK+L P++D + E
Sbjct: 47 IKYYLPSCGACKRLGPMWDNMVE 69
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.66
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 113 LQDPLVFIFVGIDGDGHDP-VAVGLRDRLQI 24
L+ P+ F FVG+DG GH P A RDR I
Sbjct: 762 LEAPIYFDFVGVDGVGHYPSKASEGRDRASI 792
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 221 NSVRRQLITAGLVFGHVLFKGDQTGRWNLILLHTEELQDPLV 96
N R + +G G +F D+ G W+L H +QD +
Sbjct: 791 NGYPRNFLHSGFSVGERVFISDEHGHWSLAKGHIVHIQDSCI 832
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 239 VLRRHLKQHLLSEDLPADWAAKPVKVLVAANFDEVVFDTTKKV 367
VLR HL HLL+ +P K L+ N + F T+ +
Sbjct: 771 VLRSHLLSHLLNNLFTVYGYVEPTKPLINENIANLFFQATQVI 813
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +2
Query: 224 GIRSIVLR-RHL--KQHLLSEDLPA-DWAAKPVKVLVAANFDEVVFDTTKKVL 370
G+R +V R ++L + H L DL A W A V +L ANF+ V+F+ +K +
Sbjct: 397 GLRCLVFRIKYLAHRPHRLKIDLNAKQWGATGVCIL-NANFNLVIFEAGQKAI 448
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 9 EKYLEDLKPVAKTYRDRIMTVAIDAD-EDEHQRILEFFGMKKDEVPSARLI----ALEQD 173
EK L +L V +Y ++ + ED ++++EF E+ L A+E D
Sbjct: 389 EKNLTELCEVC-SYIQSFQNAILEGEREDVDKKVVEFLNPLVLELQERLLFVVQTAIETD 447
Query: 174 MAKYKPSSNELSPNA 218
+ +Y P+ +L+P A
Sbjct: 448 IQRYSPTEEDLNPIA 462
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 520 FPTIKLYSKDNQVHDYNGERTLAGLTKFVE 609
FPT+ +Q+++Y GE GL ++E
Sbjct: 526 FPTVYFTKISDQINNYEGELPTDGLKYYIE 555
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 562 DYNGERTLAGLTKFVETDGEGAEPVPSVTEFEEEEDVPARDE 687
D N E T ETD E V +V E +EE ++E
Sbjct: 224 DENEENKETSTTNVAETDAPEEETVDTVEEIADEEKHSVKEE 265
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 578 GHWPASPSSLRPTVK 622
G+WP PSS+RP K
Sbjct: 384 GNWPNYPSSIRPLAK 398
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 60 IMTVAIDADEDEHQRILEFFGMKKDEVPSARLIALEQ-DMAKYKPSSNELS 209
I + ID D + QR+L G + + +AL Q PS+ +L+
Sbjct: 326 IGSATIDKDAEGFQRVLAMLGRQASSTTGSPKVALSQMPQVNVNPSNQDLA 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,335
Number of Sequences: 5004
Number of extensions: 55389
Number of successful extensions: 204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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