Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30412
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    29   0.056
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.69 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.5  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 0.056
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 299 RPSPRAGPRSADAASGAVEERLNEFLNSVRRQLITAG 189
           RPS  A P S    SG V       +N V R+  TAG
Sbjct: 270 RPSDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAG 306


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 592 LTKFVETDGEGAEPVPSVTEFEEEEDVPARDE 687
           L K  + DGEGA+      E EEEED   + E
Sbjct: 266 LRKRRQNDGEGADDRDDDEENEEEEDGRGQSE 297


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 535 LYSKDNQVHDYNGERTLAGLTKFVE 609
           LY  D  +HD++ +  LAG  + VE
Sbjct: 338 LYINDLSMHDFSRDLMLAGTQQSVE 362


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 120 GMKKDEVPSARLIALEQDMAKYKPSSNELSPNAIEEFVQS 239
           GMK++ V   R    E+D ++ + +S+  S   IE  +++
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEA 213


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 120 GMKKDEVPSARLIALEQDMAKYKPSSNELSPNAIEEFVQS 239
           GMK++ V   R    E+D ++ + +S+  S   IE  +++
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEA 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,978
Number of Sequences: 438
Number of extensions: 3781
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)