Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30411
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    27   1.5  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   3.4  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   4.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   6.0  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   7.9  

>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 188 HFKGSSRRNHQFTNLFEMPSQLPWLNDPTGD 280
           HF+ S++ N   T+LFE  S+L   N+ + D
Sbjct: 154 HFEASAKENTNVTDLFETVSRLALENESSRD 184


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 42  DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEG 152
           D  F     V + VQ P T  +AK F P + K S EG
Sbjct: 208 DPRFTDPRTVFEEVQEPVTNVDAKVFHPEKRKRSREG 244


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +2

Query: 26  PSKPQRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKVLRRRKPCMLGTSFLQAHFKGSS 205
           P  P + +   HD  + + T   + D   +L    R+ LRR     L  S L      ++
Sbjct: 260 PWPPNQHIKFAHDDKNVVSTDFIHPDWQYKLERARRRALRRAANATLLNSHLLETGPANA 319

Query: 206 RRNHQFTNLFEMPS 247
             NH  T+L   P+
Sbjct: 320 NANHN-TDLSHDPT 332


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 171 PHSCKLTSKEVPGETINLQTCLRCP 245
           P+S  +TS   PGE +N    L+ P
Sbjct: 329 PYSFPITSSVHPGEDVNFTVALKVP 353


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 109 PRTSSRGEKSAPSKET-LHAGYLIPASSLQRKFPEKPSIYK 228
           P  S  G+     K+T L     + AS  QRK  EKPS+ K
Sbjct: 193 PLLSVDGDSPLTEKDTNLTTPATLKASDQQRKVLEKPSVSK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,610
Number of Sequences: 5004
Number of extensions: 49310
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)