Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30411
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0466 + 3649500-3649635,3649925-3650520                           28   6.1  
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551...    28   6.1  

>12_01_0466 + 3649500-3649635,3649925-3650520
          Length = 243

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 179 LQAHFKGSSRRNHQFTNLFEMPSQLPWLNDPTGD 280
           LQ H +   +R    T LFE+  QL    +P GD
Sbjct: 151 LQLHLRAEPKRGRPGTGLFELGLQLHLWAEPKGD 184


>09_04_0517 -
           18253325-18253870,18254209-18254781,18254888-18255100,
           18255554-18255685,18255804-18255944,18256104-18256325
          Length = 608

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +1

Query: 361 YIIVGNVTKAILSNEYVFE*VQSVPGHNPARSLSTYPIVCNIGSHEYLIVCFILYVIFYC 540
           Y  +  + K +  ++  FE    V GH+ A+      +     S EY+I+  +  + F C
Sbjct: 478 YGFIDTIRKCVGMSKMSFEVTAKVSGHDEAKRYEQEILEFGSSSPEYVIIATVALLNFVC 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,559
Number of Sequences: 37544
Number of extensions: 310314
Number of successful extensions: 783
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)