Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30411
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                48   4e-06
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       48   7e-06
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               28   6.3  
SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_49716| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 27   8.3  

>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +3

Query: 66  QVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRCP 245
           QVI+W++NP+ V  A  F  W   C     P C  P+ C  T+     +   + TC  CP
Sbjct: 465 QVIEWMKNPQDVNGANGFPAW--DCLTRPKPRCTTPNVCHYTTP----QDFYMPTCSDCP 518

Query: 246 VNYPG*TTP 272
            ++P  T P
Sbjct: 519 KHFPSPTNP 527


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = +3

Query: 33  SHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACW 167
           S  DVYFVT++Q I+W++ P  + + K F PW  +C     PA W
Sbjct: 818 SQGDVYFVTVSQAIEWIKTPTPLEKIKTFAPW--QCDKPAPPAPW 860


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 60   MTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPG 209
            + QVI + ++P   ++     P+    +V G P C    +C  TSK V G
Sbjct: 3934 LVQVIIFGRDPCYASDCAEKRPYSTCQAVNGQPTCVCNKNCPSTSKPVCG 3983


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 160  AGFPSTEHFSLHGSKFLASVTVRGFCTHWITCVM 59
            AG P+T HF LHG+  +++    G  T  +T +M
Sbjct: 1132 AGPPNTSHFGLHGASTISTTLTPGQST-TLTIIM 1164


>SB_52653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +3

Query: 60  MTQVIQWV-QNPR---TVTEAKNFEPWREK 137
           + ++ QW+ QNPR    ++  +N+EPW E+
Sbjct: 151 LKEIDQWLNQNPREIVVISFTRNYEPWNER 180


>SB_49716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 127 HGSKFLASVTVRGFCTHWITCVMVT 53
           H ++ L  +TV   CT WI C  VT
Sbjct: 320 HPTRSLTLITVEHGCTTWINCDQVT 344


>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +3

Query: 60  MTQVIQWVQNPRTVTEAKNFEPWREK----CSVEGNPACWVPHSC 182
           +  +I  VQ       AK    W +     CS  G+ AC VP+SC
Sbjct: 125 LQNLIDGVQQEFKCCGAKGINDWDKNIYFNCSSPGSEACGVPYSC 169


>SB_46989| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 719

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 161 CRVSFDGALFSPRLEVLGFSHGTWVLYPLDH 69
           C  + D A  + +   L  +HG W   PLDH
Sbjct: 319 CSKAGDKATSNAKENALNAAHGAWYTIPLDH 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,700,802
Number of Sequences: 59808
Number of extensions: 377879
Number of successful extensions: 1007
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)