Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30411
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 46 2e-05
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 42 4e-04
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 42 4e-04
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical ... 32 0.25
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 30 1.4
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 30 1.4
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 30 1.4
AF038608-6|AAT92088.1| 312|Caenorhabditis elegans Serpentine re... 29 3.1
Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 5.5
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 28 5.5
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr... 27 7.2
U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permeas... 27 7.2
AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion transpo... 27 7.2
AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion transpo... 27 7.2
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 27 9.5
AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm rece... 27 9.5
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Frame = +3
Query: 27 LQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREK--C----SVEGNPA---CWVPHS 179
+ + DVY VT+ Q+I W++ P ++E K+ + C S NP+ C +P+
Sbjct: 1781 MSAQKDVYIVTIKQLIDWMKRPVPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNK 1840
Query: 180 CKLTSKEVPGETINLQTCLRCPVNYP 257
C ++ + + TCL CP YP
Sbjct: 1841 CLYSTPSLSSQEHQFLTCLPCPTMYP 1866
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 203 SRRNHQFTNLFEMPSQLPWLNDPTG 277
S + HQF P+ PWL +P G
Sbjct: 1849 SSQEHQFLTCLPCPTMYPWLENPAG 1873
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 42 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 215
DV+ VT +Q+I +++NP + K+ W+ K + E NP C P +C + +
Sbjct: 284 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 342
Query: 216 INLQTCLRCPVNYP 257
+ + C CP +YP
Sbjct: 343 HSFRMCGVCPKSYP 356
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 42 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 215
DV+ VT +Q+I +++NP + K+ W+ K + E NP C P +C + +
Sbjct: 2353 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 2411
Query: 216 INLQTCLRCPVNYP 257
+ + C CP +YP
Sbjct: 2412 HSFRMCGVCPKSYP 2425
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 42 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 215
DV+ VT +Q+I +++NP + K+ W+ K + E NP C P +C + +
Sbjct: 1225 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 1283
Query: 216 INLQTCLRCPVNYP 257
+ + C CP +YP
Sbjct: 1284 HSFRMCGVCPKSYP 1297
>AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical
protein Y119C1A.1 protein.
Length = 256
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 90 PRTVTEAKNFEPWR-EKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRC 242
PR++++ + PW ++CS E N + H C+L S+ I+ C C
Sbjct: 198 PRSISQENSTGPWICDRCSRENNSNSYRCHHCQLPSRRFDPSEIDFCGCEYC 249
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 88 THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 222
TH P L PRT+SR +APS++ L + +S +RK ++ S+
Sbjct: 104 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 146
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 88 THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 222
TH P L PRT+SR +APS++ L + +S +RK ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 88 THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 222
TH P L PRT+SR +APS++ L + +S +RK ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078
>AF038608-6|AAT92088.1| 312|Caenorhabditis elegans Serpentine
receptor, class z protein82 protein.
Length = 312
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Frame = -2
Query: 368 IMYFEQLLHQININ**STWGSRSWLLNSGHRPWGRLTRVVDWASQTSL*IDGFSGNF-L* 192
++Y QLL + R+ + SGH + L + + W + TSL ++ F+ +
Sbjct: 190 VLYIMQLLSTLFYIPILRSARRNPYVTSGH--YYSLQKYIYWQTLTSLILESFTIIMCIL 247
Query: 191 SELAGMRYPACRVSFDGA--LFSP-RLEVLGFSHGTWVLYPLDHLCHGNEVNVVVALK 27
L+G+ + ++ A + +P ++V W++YP +L N +NVV ++K
Sbjct: 248 IYLSGLSFSEIMLAIVLANIIITPLTIQVSYLGSKKWIVYPSGNLSLKNFINVVFSIK 305
>Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical
protein C27A7.7 protein.
Length = 336
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 481 NIGSHEYLIVCFILYVIFY 537
NIG+++Y++VCF L+ I Y
Sbjct: 37 NIGAYKYMLVCFGLFDITY 55
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 112 RTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 222
+ S+ + S PS E LH+ ++ P ++ + F EKPS+
Sbjct: 2391 KLSTASKDSLPS-EALHSKWVPPQKNIVQLFAEKPSV 2426
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 93 RTVTEAKNFEPWREKCS 143
+ T KNFE W+EKCS
Sbjct: 26 KQATFQKNFESWKEKCS 42
>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical protein
H08M01.2b protein.
Length = 1341
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +3
Query: 84 QNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRCPVNYPG* 263
Q+PRT +AK + N W+P + T +L T L +NYP
Sbjct: 1081 QSPRTDRKAKLYSSLNSTTEKVSNVLSWLPSKTSKKLMKNKSATHDLSTSL---INYPAS 1137
Query: 264 TTPRAMATIKE 296
T+ + + E
Sbjct: 1138 TSTQGVIAANE 1148
>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical protein
H08M01.2a protein.
Length = 1320
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +3
Query: 84 QNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRCPVNYPG* 263
Q+PRT +AK + N W+P + T +L T L +NYP
Sbjct: 1081 QSPRTDRKAKLYSSLNSTTEKVSNVLSWLPSKTSKKLMKNKSATHDLSTSL---INYPAS 1137
Query: 264 TTPRAMATIKE 296
T+ + + E
Sbjct: 1138 TSTQGVIAANE 1148
>U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permease
family protein 3 protein.
Length = 782
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 15 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 134
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
>AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion
transporter SULP-3b protein.
Length = 762
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 15 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 134
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
>AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion
transporter SULP-3a protein.
Length = 782
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 15 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 134
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 150 GNPACWVPHSCKLTSKEVPGETINLQTCLRCPVNYPG*TTPR-AMATIKEP 299
G P PH ++ E+ N TC++CP PG PR A ++ EP
Sbjct: 117 GEPGASGPHG--MSGSELTKMMRNDDTCIKCPAGPPG---PRGAPGSVGEP 162
>AF101318-2|AAK68599.1| 331|Caenorhabditis elegans Seven tm
receptor protein 66 protein.
Length = 331
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 110 GFSHGTWVLYP-LDHLCHGNEVNVVVALKD 24
GF G W+LYP L +C+ + + + A D
Sbjct: 127 GFKGGLWMLYPLLPGICYASTIKYLCAPND 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,143,711
Number of Sequences: 27780
Number of extensions: 272289
Number of successful extensions: 809
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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