Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30411
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.6  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 337 IWCSSCSKYIIVGNVTKAILSN 402
           +W SSCS ++ +  +  A+++N
Sbjct: 278 VWMSSCSVFVFLSLMEFAVVNN 299


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 54  VTMTQVIQWVQNPRTVTEAKN 116
           +T TQV  W QN RT  + +N
Sbjct: 47  LTETQVKIWFQNRRTKWKKQN 67


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 389 ALVTLPTIMYF 357
           AL+TLPTI +F
Sbjct: 327 ALITLPTIFWF 337



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 275 PWGRLTRVVDWASQTSL 225
           P  RL RVVDW  +  L
Sbjct: 49  PLDRLQRVVDWFRKNML 65


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 358 KYIIVGNVTKAILSN 402
           KY ++GN TK I+ N
Sbjct: 449 KYDLIGNGTKLIIKN 463


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 362 YFEQLLHQININ 327
           YFEQ L+++N N
Sbjct: 48  YFEQTLNELNFN 59


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +2

Query: 14  DRRDPSKPQRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKVLRRRKPCMLG 169
           D R   K +  LLR  D+ D   +  TY        A    V  +   C+LG
Sbjct: 63  DGRVGGKRRNILLRRTDSMDSQNSASTYNSFLSSDSASSGNVYCKCDDCLLG 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,212
Number of Sequences: 438
Number of extensions: 3362
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)