Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30411
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138...    30   1.3  
At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138...    29   1.7  
At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase...    29   2.2  
At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative              28   3.9  
At1g20780.1 68414.m02602 armadillo/beta-catenin repeat protein-r...    28   3.9  
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ...    28   5.1  
At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138...    28   5.1  

>At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as ' axi
           1 protein from Nicotiana tabacum -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 481

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 161 CRVSFDGALFSPRLEVLG 108
           CRV+F G  F+PR+E LG
Sbjct: 224 CRVNFQGLRFTPRIEALG 241


>At1g14020.1 68414.m01656 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 499

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 176 MRYPACRVSFDGALFSPRLEVLG 108
           +++  CRV+F G  F+P+LE LG
Sbjct: 222 LQWLRCRVNFQGLKFTPQLEALG 244


>At1g65570.1 68414.m07438 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 397

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 24  ILQSHNDVYFV-TMTQVIQWVQNPRTVTE-AKNF-EPWREKCSVEGNPACWVPHSCKLTS 194
           I+ SH   +   T   V+ +  NP  + E AK F + W   C VE +   +VP    L S
Sbjct: 17  IIMSHFGQFDARTSLNVLSFGANPNGIVESAKAFSDAWDAACGVEDSVVIYVPKGRYLVS 76

Query: 195 KEV 203
            EV
Sbjct: 77  GEV 79


>At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative
          Length = 268

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 370 VGNVTKAILSNEYVFE*VQSVPGHNPARSLSTYPIV---CNIGSHEYLIVCF 516
           +G +TKAI+S+   F  + S+  +N +R L    ++   C I SH  ++ CF
Sbjct: 55  IGKLTKAIVSSSLCFLYLLSILHYNESRKLPETSLLCRTCRIKSH--VVFCF 104


>At1g20780.1 68414.m02602 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 801

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 81  VQNPRTVTEAKNFEPWREKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLR 239
           ++N RT  E +  E W ++C   G P      SC LTS+E+    ++    LR
Sbjct: 42  LENGRTF-EREAIEKWFKECRDSGRPP-----SCPLTSQELTSTDVSASIALR 88


>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
           WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
          Length = 293

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 30  QSHNDVYFVTMTQVIQWVQN-PRTVTEAKNFEPWREKCSVE 149
           Q+   V +V   ++   + N PR   EAK+F  WR+ C  E
Sbjct: 171 QNRQSVAYVDRERLQHSINNEPRFSKEAKDFFQWRKSCEEE 211


>At5g15740.1 68418.m01841 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 508

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 161 CRVSFDGALFSPRLEVLG 108
           CRV+F+G  F+P++E LG
Sbjct: 243 CRVNFNGLKFTPQIEELG 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,084
Number of Sequences: 28952
Number of extensions: 253957
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)