Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30410
         (460 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   1.0  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   2.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   3.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   5.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.3  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    20   9.6  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 66  DTPPAISRPNRPNSLQVPLSLTPAQ-IHNNKVLGNSKIAGIEISTPSNGMFNYESLMD 236
           D P  +S  N+ NS+ VPLS++  Q +  N   G         S+ S G F    ++D
Sbjct: 28  DEPENLS--NKSNSITVPLSISTGQRLPANFSFGQVNSPPSSTSSGSLGQFPATPVID 83


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 285 CACPSGWESTGSTPCP 238
           C CP  WE T  +  P
Sbjct: 168 CRCPPDWEGTTLSQSP 183


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 451 YTGFRVQRFAA*SEHKARDDE-AVSRVR*AGSG 356
           YTG+ +  +AA      +DDE  +S  R +G G
Sbjct: 84  YTGYHLGSYAANCPPSPKDDEKCLSLERPSGGG 116


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 268 VGKHWVNPVPPSMRLS*LNMPLLGVLIS 185
           V  H+V P PP   L    +P +G +++
Sbjct: 413 VSPHYVTPTPPEAPLFQNVLPPIGGMMN 440


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 51  DTVTLDTPPAISRPN 95
           D V+L   PA+S PN
Sbjct: 453 DNVSLSQVPALSTPN 467


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 403 LCVLTRPRSVEP 438
           LCV  RP S EP
Sbjct: 17  LCVRKRPHSPEP 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,595
Number of Sequences: 336
Number of extensions: 2170
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)