Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30410
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 1.4
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 4.2
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 25 5.6
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 5.6
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 25 5.6
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 7.3
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 7.3
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 7.3
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 24 9.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 24 9.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 9.7
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 459 SFGTPGS-GFNASRPSQNTKHAMTRPSLEFDKP 364
S+G S +NASRP N H+ PS KP
Sbjct: 290 SYGNGASTNYNASRPPSNHPHSSNYPSSSRRKP 322
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 21 SANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTP 134
S +PGVV S + + ++P S P +++ +PL+ +P
Sbjct: 138 SFSPGVVASVNPNSNNSPTFYSNPPALSNIPIPLNNSP 175
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN ++GQ G+ W GH
Sbjct: 86 RPDNIIYGQSGAGNIWAKGH 105
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 5.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 187 SMPAILLFPSTL--LLCICAGVRLSGTCSELGLLGREIAGGVSNVTVSPLVTTPGLAEDS 14
S P+I+ P T ++ I + SGTC + G + A + +V P V P + S
Sbjct: 383 SDPSIVSDPRTARNIVSIPHQIHFSGTCYSVAAGGWQSAALAISESVLPEVNVPPITTFS 442
Query: 13 II 8
II
Sbjct: 443 II 444
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 9 IMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSL 110
I+LS PG T D+ P I P++PNS+
Sbjct: 184 ILLSETEPGTPTKNDS-----PAYIGLPSQPNSI 212
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 287 RARVLAGGKALGQPRAPVHEAFV 219
R R L GGK L P APV ++ V
Sbjct: 397 RLRSLEGGKLLPLPTAPVQQSKV 419
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 7.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 87 RPNRPNSLQVPLSLTPAQIHNNKV--LGNSKIAGIEISTPSNGMFNYESL 230
RP P + ++ + + P QI NKV GN AG S + G+ E L
Sbjct: 527 RPRLPKAKKLDMYIYPWQIQVNKVEWNGNKGYAGWLASGMACGILRVEDL 576
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 361 NRLIEL*RRPRHRV 402
NRL+ L RRP+H+V
Sbjct: 873 NRLVSLLRRPKHKV 886
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 142 YTTTKYSGTAK*PASRSARLATACLTTKASWTGA 243
YTT Y +A PA+ A+ ++ L++ AS + A
Sbjct: 142 YTTAVYGDSATTPAASEAQASSDILSSLASLSSA 175
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 96 YWVEK*RAGYPT*PYPHSSPRQGWPKTALSF 4
+W + PT P P +SP+ P +A F
Sbjct: 4 HWKRHDSSNIPTQPSPSASPKSNKPSSAQRF 34
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 9.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 30 PGVVTSGDTVTLDTPPAISRPN 95
PG + ++ L+ PP +S PN
Sbjct: 561 PGSYNTSESSNLNAPPGVSMPN 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,612
Number of Sequences: 5004
Number of extensions: 34162
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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