Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30410
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1623 - 38716606-38717424 30 1.0
08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065 28 3.1
04_04_1166 - 31427523-31428154,31428888-31429020 28 4.2
04_01_0033 + 391565-391974,393484-393520,394959-395483 28 4.2
08_01_0050 + 350768-351214,352597-352717,352944-353118,353225-35... 27 5.5
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 27 5.5
06_03_0078 + 16291254-16291532,16291654-16291725 27 5.5
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 27 5.5
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 27 5.5
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 27 5.5
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 27 5.5
03_01_0034 + 318432-318825,318902-319851 27 5.5
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 27 5.5
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 27 5.5
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 27 5.5
01_01_0369 - 2886060-2886272,2886721-2887434 27 5.5
11_06_0261 - 21765167-21765373,21765828-21766097,21767330-217673... 27 7.3
06_02_0006 + 10528423-10528768,10529132-10529201,10530820-105308... 27 7.3
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142... 27 9.6
08_01_0587 + 5215931-5216051,5216210-5216766 27 9.6
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 27 9.6
02_03_0283 + 17267199-17267334,17267424-17267959 27 9.6
01_05_0534 + 22999876-23000333,23000835-23000949 27 9.6
01_05_0014 - 17162664-17163500 27 9.6
>01_06_1623 - 38716606-38717424
Length = 272
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 9 IMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPA 137
++ S +P T+ +TL PP R RP S V L+ TP+
Sbjct: 17 VLQSIGHPIPATAVPDITLPVPPGERRTTRPESETVYLNFTPS 59
>08_01_0708 + 6261524-6262249,6262776-6262925,6263760-6264065
Length = 393
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 191 QHA*QRHV*LRKPHGRGHGVDPVLSHPLGHAHGT 292
+HA HV HG HG H GH+HG+
Sbjct: 185 EHAGHVHVHTHATHGHAHGHVHSHGHGHGHSHGS 218
>04_04_1166 - 31427523-31428154,31428888-31429020
Length = 254
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTPPAI 83
LSS NPGV+T + V TPP +
Sbjct: 182 LSSQNPGVITIANAVFGSTPPIL 204
>04_01_0033 + 391565-391974,393484-393520,394959-395483
Length = 323
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 313 PPGAGDPPELVSL*PPNRLIEL*RRPRHRVLCVLT 417
P GAG PP ++ L P ++ + R R+RVL +L+
Sbjct: 4 PSGAGKPPAVLLLRPVDQPFAVALRERYRVLDLLS 38
>08_01_0050 +
350768-351214,352597-352717,352944-353118,353225-353295,
353575-354209
Length = 482
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = -1
Query: 127 RLSGT---CSELGLLGREIAGGVSNVTVSPL 44
R+SGT CS +G G E++GG+SNV + L
Sbjct: 315 RVSGTTPTCSGVGF-GSEMSGGISNVIIRDL 344
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>06_03_0078 + 16291254-16291532,16291654-16291725
Length = 116
Score = 27.5 bits (58), Expect = 5.5
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +1
Query: 133 LHRYTTTKYSGTAK*PASRSARLATACLTTKASWTGARG*PSAFPPARTRARYVXFPXSV 312
L R+ T YS + P R A +A + TT + A P AR+R
Sbjct: 19 LRRFAYTSYSSSCG-PIRRHAAVALSSTTTTTTRFAAWSPPPPSGGARSRGFAAWASAPG 77
Query: 313 PPGAGDPPELVSL 351
P G+ D P + +L
Sbjct: 78 PAGSTDSPAMQAL 90
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 266 RPDNFVFGQSGAGNNWAKGH 285
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 202 LGVLISMPAILLFPSTLLLCIC-AGVRLSGTC 110
L L+S+ +++LFPS L C C GV C
Sbjct: 176 LSPLLSLSSLILFPSRALCCECGCGVASHALC 207
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>01_01_0369 - 2886060-2886272,2886721-2887434
Length = 308
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 241 ARG*PSAFPPARTRARYVXFPXSVPPGAGDP 333
A G PS P R +A YV P PP G P
Sbjct: 110 AGGFPSLVQPPRVQAPYVAPPPPPPPPPGHP 140
>11_06_0261 -
21765167-21765373,21765828-21766097,21767330-21767377,
21767472-21767600,21767701-21767961,21768072-21768164,
21768252-21768344,21769403-21769496,21769609-21770072
Length = 552
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = -3
Query: 278 VLAGGKALGQPRAPVHEAFVVKHAVARRADLDAGYFAVPE 159
VL GG A G P A V A A A DA Y AVP+
Sbjct: 29 VLGGGGAAGVGFPPGFAAIPVAGAEAGAAGQDAVYAAVPD 68
>06_02_0006 +
10528423-10528768,10529132-10529201,10530820-10530892,
10530973-10531053,10532124-10532239,10532339-10532630
Length = 325
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 69 TPPAISRP--NRPNSLQVPLSLTPAQIHNNKVLGN 167
TPP P N+ NS+ P L+PA HNN+ + +
Sbjct: 269 TPPISPSPVNNKSNSIS-PTPLSPAPDHNNRAVAD 302
>12_02_0372 +
18212948-18213821,18213887-18214030,18214128-18214273,
18214854-18214862
Length = 390
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 12 MLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEI 191
+ S+A P + + V T P RP +P S P Q H ++V + AG+++
Sbjct: 64 LTSTAPPRPIVISEPVRKPTQPH-PRPKQPTKPPPSSSTQPQQRHQSQVKKHISSAGLQV 122
Query: 192 ST 197
+
Sbjct: 123 ES 124
>08_01_0587 + 5215931-5216051,5216210-5216766
Length = 225
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTPP 77
LSS NPGV+T + TPP
Sbjct: 175 LSSQNPGVITIASAIFGSTPP 195
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 236 RGHGVDPVLSHPLGHAHG 289
R HGV V +P GH HG
Sbjct: 91 RRHGVAAVAEYPCGHRHG 108
>02_03_0283 + 17267199-17267334,17267424-17267959
Length = 223
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQV 116
LSS NPGV+T G+ V + P+IS + QV
Sbjct: 179 LSSQNPGVITVGNAV-FGSKPSISDDILAKAFQV 211
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 24 ANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTP 134
A P + T TL TPP +S+P P P S P
Sbjct: 50 AAPPLSPPPKTPTLSTPPTLSQPPTPVKPAAPSSSPP 86
>01_05_0014 - 17162664-17163500
Length = 278
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 69 TPPAIS--RPNRPNSLQVPLSLTPAQIHNNKVLGNS 170
+PPA S RPN P SL+P + K+ G+S
Sbjct: 60 SPPASSLVRPNPPRPHSAARSLSPRHVIKTKIRGDS 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,620
Number of Sequences: 37544
Number of extensions: 302632
Number of successful extensions: 1018
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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