Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30410
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            32   0.20 
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.4  
SB_5299| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 28   3.2  
SB_27213| Best HMM Match : DUF1416 (HMM E-Value=0.18)                  28   3.2  
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)           28   4.3  
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     27   5.6  
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)                     27   5.6  
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     27   5.6  
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)                     27   5.6  
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)                   27   7.5  
SB_2200| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_46958| Best HMM Match : DUF1349 (HMM E-Value=5.2)                   27   9.9  
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)                   27   9.9  
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)                  27   9.9  

>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 18  SSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQ 140
           ++  P   T+  T T  TPPA + P +P +   P + TP +
Sbjct: 79  TTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPTK 119



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 18  SSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQ 140
           ++  P   T+    T  TPPA + P +P +   P + TP +
Sbjct: 135 TTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTK 175



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 42  TSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQ 140
           T+  T T  TPPA + P +P +   P + TP +
Sbjct: 45  TTPTTPTTTTPPATTTPTKPTNTTPPATTTPTK 77



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 18  SSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTP 134
           ++  P   T+    T  TPPA + P +P +   P + TP
Sbjct: 51  TTTTPPATTTPTKPTNTTPPATTTPTKPTTTTPPATTTP 89



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 18  SSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQ 140
           ++  P   T+    T  TPPA + P  P +   P + TP +
Sbjct: 65  TNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPTK 105



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 18  SSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQ 140
           ++  P   T+    T  TPPA + P +P +   P + TP +
Sbjct: 93  TTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPGTTTPTK 133



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 18  SSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQ 140
           ++  P   T+    T  TPPA + P +P +   P + TP +
Sbjct: 121 TTTTPPGTTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTK 161



 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 18  SSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQ 140
           ++  P   T+    T  TPP  + P +P +   P + TP +
Sbjct: 107 TTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTTPTK 147


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +3

Query: 3    KRIMLSSANPGVVTSGDTVTLDTPPAISRPNRP--NSLQVPLSLTPAQIHNNKVLGNSKI 176
            K I+ + + P V   G+ V L TP   +        ++   ++  P  +  N V GN  +
Sbjct: 2111 KPILPNPSGPQVPLGGNVVRLSTPLITTSGGATPVGNIAALVASIPGNMVTN-VTGNVVV 2169

Query: 177  AG----IEISTPSNGMFNYESLMDGGTGLT 254
             G    I I TPS   F  +  + GG G T
Sbjct: 2170 PGQTQLIRIVTPSGQTFTVQGTIQGGPGAT 2199


>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 235 SMRLS*LNMPLLGVLISMPAILLFPSTLLLCICAGVRLSGTCSELGLLGREIAGGVSNVT 56
           +M LS L + L G+    P +LLFP+   +C    + L    S+LG+ G        N T
Sbjct: 531 AMLLSELCITLKGMARERPLMLLFPARFSICFHPFIYLIHLFSDLGINGEAGVDSSLNAT 590


>SB_5299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 46  VGIRSRWIPRPLFLDPIGLIHYKYRSVSHLHRY 144
           VG+  RW   P++ +  G + YKY  V+ ++RY
Sbjct: 50  VGLGWRWGSLPVYFETRGAMFYKYFFVTCVYRY 82


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 27  NPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGN 167
           N   V++GD V     P+ S PN P S     S+T  +  + + LGN
Sbjct: 685 NEPSVSNGDQVFFPPSPSHSNPNSPKSALKKSSVTTGRGASGEDLGN 731


>SB_27213| Best HMM Match : DUF1416 (HMM E-Value=0.18)
          Length = 752

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 94  LGREIAGGVSNVTVSPLVTTPGLAEDSIIL 5
           +G   AGG + +TV  +  TPG +E+ I +
Sbjct: 237 VGSVPAGGTAQITVDMMAETPGFSEEDIAI 266


>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
          Length = 525

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 146 QQQSTREQQNSRHRDQHA*QRHV*LRKPHGR 238
           Q+Q  RE+   R RD+    +HV  R+P G+
Sbjct: 477 QEQRRRERMEKRKRDEEMRSKHVDHREPKGQ 507


>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 86  RPDNFVFGQSGAGNNWAKGH 105


>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 391

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2  KKDNAVFGQPWRGDEWGYGH 61
          + DN VFGQ   G+ W  GH
Sbjct: 31 RPDNFVFGQSGAGNNWAKGH 50


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 86  RPDNFVFGQSGAGNNWAKGH 105


>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 458

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 299 RPDNFVFGQSGAGNNWAKGH 318


>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
          Length = 1828

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 90  PNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEISTPSNGMFNYESL 230
           P++   ++V     P  IHN +++G++   G+E+S   +   N + +
Sbjct: 558 PSKCFVMRVTRKTNPVLIHNYRLMGHTPYLGVELSDTLDWSHNSDKI 604


>SB_2200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 9   IMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIE 188
           +ML   + G+V +    T+     ISR       +VP S T    H  K++  +   G+E
Sbjct: 226 LMLHKIHHGLVVTDGLPTVPPMYRISRHMNSQRYKVPPSRT--NYHKKKIVLPTDHQGLE 283

Query: 189 ISTPSN 206
           +ST +N
Sbjct: 284 LSTGTN 289


>SB_46958| Best HMM Match : DUF1349 (HMM E-Value=5.2)
          Length = 248

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 90  PNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEIS 194
           P++   ++V     P  IHN +++G++   G+E+S
Sbjct: 203 PSKCFVMRVTRKTNPVLIHNYRLMGHTPYLGVELS 237


>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 217 LNMPLLGVLISMPAILLFPSTLLLCICAGVRLSGTCSELGLLGREIAGGV 68
           L+ P  G +++M  ILLF    +LC     RL    S +  L  + AG +
Sbjct: 656 LSTPPSGGVLNMARILLFVLAAVLCTVIAERLEKEVSGIKFLALKRAGKI 705


>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
          Length = 813

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 130 VRLSGTCSELGLLGREIAGGVSNVTVSPLVTTPGLAED 17
           V  + TCSE G +G E      N T +P  T+  LA+D
Sbjct: 266 VHKAATCSESGEMGNE------NATTAPKTTSDDLADD 297


>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
          Length = 394

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 140 DTQQQSTREQQNSRHRDQHA*Q 205
           +T +++ R+QQ  + RDQHA Q
Sbjct: 239 ETSKRTKRDQQEDQERDQHADQ 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,605
Number of Sequences: 59808
Number of extensions: 305115
Number of successful extensions: 923
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)