Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30410
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    30   0.70 
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    30   0.70 
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   1.2  
AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z67880-2|CAA91792.2|  505|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z92803-10|CAB07246.1|  449|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical pr...    27   5.0  
X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin pr...    27   5.0  
U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory ...    27   5.0  
AF016676-5|AAG24100.1|  473|Caenorhabditis elegans Cytochrome p4...    27   5.0  
U50193-4|AAP68917.1|  492|Caenorhabditis elegans Nuclear pore co...    27   6.6  
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co...    27   6.6  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    27   6.6  
AL132865-14|CAB60610.1|  363|Caenorhabditis elegans Hypothetical...    27   6.6  
U40941-9|AAX55692.1|  294|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 45  SGDTVTLDTPPAISRPNRPNSLQV-PLSLTPAQIHNNK 155
           SG     D  P+ SRPN PN+ Q+ PL+ TP  I  NK
Sbjct: 9   SGYPTPRDEIPSTSRPNSPNNAQLYPLTSTP--IRGNK 44


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 45  SGDTVTLDTPPAISRPNRPNSLQV-PLSLTPAQIHNNK 155
           SG     D  P+ SRPN PN+ Q+ PL+ TP  I  NK
Sbjct: 9   SGYPTPRDEIPSTSRPNSPNNAQLYPLTSTP--IRGNK 44


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 96  RPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEISTPSNG-MFNYESLMDGGTG 248
           +PN   +P+S+ P QI  ++++   +    +   P  G    + + MDG  G
Sbjct: 145 QPNGQNIPMSIMPNQIPQHRIIHQGQPQQAQQQQPQQGNQLTHMNQMDGNVG 196


>AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.10 protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 279 CPSGWESTGSTPCP 238
           CP GWE  G  PCP
Sbjct: 40  CPDGWEFGGRAPCP 53


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 247 G*PSAFPPARTRARYVXFPXSVPPGAGDP 333
           G P AFPP  +       P + PPG G P
Sbjct: 264 GMPRAFPPGASAPVAPGMPGAFPPGQGGP 292


>Z67880-2|CAA91792.2|  505|Caenorhabditis elegans Hypothetical
           protein C34E7.1 protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +3

Query: 63  LDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEISTPSNGMFNYESLMDGG 242
           LD P  +  PN     Q P S    Q  NN ++GN +++G +++        + ++M GG
Sbjct: 251 LDEPTQVPAPNY--HFQPPPSYGYQQ--NNNMMGNPQVSGHQMA-GGQQQLQHHAMMHGG 305

Query: 243 TGLTQ 257
            G +Q
Sbjct: 306 PGGSQ 310


>Z92803-10|CAB07246.1|  449|Caenorhabditis elegans Hypothetical
           protein K01G5.7 protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 86  RPDNFVFGQSGAGNNWAKGH 105


>Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical
           protein C54C6.2 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 86  RPDNFVFGQSGAGNNWAKGH 105


>Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical
           protein B0272.1 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 86  RPDNFVFGQSGAGNNWAKGH 105


>Z35597-5|CAA84648.1|  450|Caenorhabditis elegans Hypothetical
           protein C36E8.5 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 86  RPDNFVFGQSGAGNNWAKGH 105


>X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin
           protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 86  RPDNYVFGQSGAGNNWAKGH 105


>U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory
           abnormality protein7 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   KKDNAVFGQPWRGDEWGYGH 61
           + DN VFGQ   G+ W  GH
Sbjct: 86  RPDNYVFGQSGAGNNWAKGH 105


>AF016676-5|AAG24100.1|  473|Caenorhabditis elegans Cytochrome p450
           family protein 33C7 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 127 RLSGTCSELGLLGREIAGGVSNVTVSPLVTTPGLAE 20
           +LS TC +L   G       +N T+  ++ TPG+ E
Sbjct: 290 QLSNTCLDLWFAGLSTTNTTANWTICYVMNTPGVLE 325


>U50193-4|AAP68917.1|  492|Caenorhabditis elegans Nuclear pore
           complex protein protein10, isoform a protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 12  MLSSANPGVVTSGDTV------TLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSK 173
           ++S  +P V  S D        + + PP+++R  R ++    +SLT   +H +  L  + 
Sbjct: 92  VMSDLSPAVTRSADVTKDLNYTSKEAPPSLARGLRNSTFNPNMSLTNRSVHESSALDKTI 151

Query: 174 IAGIEISTPSNGMFN 218
            + ++ S   NG  N
Sbjct: 152 DSALDAS--MNGTSN 164


>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore
           complex protein protein10, isoform b protein.
          Length = 1189

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 12  MLSSANPGVVTSGDTV------TLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSK 173
           ++S  +P V  S D        + + PP+++R  R ++    +SLT   +H +  L  + 
Sbjct: 92  VMSDLSPAVTRSADVTKDLNYTSKEAPPSLARGLRNSTFNPNMSLTNRSVHESSALDKTI 151

Query: 174 IAGIEISTPSNGMFN 218
            + ++ S   NG  N
Sbjct: 152 DSALDAS--MNGTSN 164


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 301 PXSVPPGAGDPPELV--SL*PPNRLIEL*RRP 390
           P +V PG  DPP ++  +   PNRL  + RRP
Sbjct: 90  PANVTPGWNDPPSMLPSAGTTPNRLSNMRRRP 121


>AL132865-14|CAB60610.1|  363|Caenorhabditis elegans Hypothetical
           protein Y62E10A.17 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 27  NPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEISTPSN 206
           NP  VT  D  T   PP +S   R N     ++LTP       V+ N+  +G E+ +P +
Sbjct: 97  NPNPVTEQDPSTFKPPPKMSNNVRKN-----INLTP-------VIENAVPSGFELESPKD 144

Query: 207 GMFN 218
             F+
Sbjct: 145 QAFD 148


>U40941-9|AAX55692.1|  294|Caenorhabditis elegans Hypothetical
           protein F35C8.1 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 63  LDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEISTPSNGMFNYESLMDG 239
           +  PP    P RP     PL  T  ++  N  LG   ++G  +S P N ++  E + +G
Sbjct: 1   MSQPPGRRMP-RPKLDLPPLRETIPEVLKNGALGYICVSGRILSVPENLLYGGERIGNG 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,696,968
Number of Sequences: 27780
Number of extensions: 215203
Number of successful extensions: 676
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)