Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30410
(460 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07210.1 68418.m00821 two-component responsive regulator fami... 29 1.5
At4g25980.1 68417.m03739 cationic peroxidase, putative similar t... 29 2.0
At5g39150.1 68418.m04736 germin-like protein, putative similar t... 28 2.6
At5g39120.1 68418.m04733 germin-like protein, putative similar t... 28 2.6
At5g39110.1 68418.m04732 germin-like protein, putative nearly id... 28 2.6
At5g39100.1 68418.m04731 germin-like protein (GLP6) nearly ident... 28 2.6
At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /... 28 2.6
At5g46370.1 68418.m05707 outward rectifying potassium channel, p... 28 3.5
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 27 4.6
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 27 4.6
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 27 4.6
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 27 4.6
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 27 4.6
At4g32610.1 68417.m04643 mitochondrial glycoprotein family prote... 27 4.6
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 27 4.6
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 27 4.6
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 27 4.6
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 27 4.6
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 27 4.6
At3g13840.1 68416.m01747 scarecrow transcription factor family p... 27 6.1
At5g38910.1 68418.m04706 germin-like protein, putative similar t... 27 8.1
At2g03330.1 68415.m00292 expressed protein 27 8.1
At1g65240.1 68414.m07396 aspartyl protease family protein contai... 27 8.1
>At5g07210.1 68418.m00821 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 621
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 18 SSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEIST 197
S+ P + SG +TL +S PN+P+ + S + NK+ S++ G
Sbjct: 370 STYEPHRIGSGSNLTLPIQSNLSFPNQPSQNEERRSFFEPPVMANKIAQTSQVLGFGQLG 429
Query: 198 PS 203
PS
Sbjct: 430 PS 431
>At4g25980.1 68417.m03739 cationic peroxidase, putative similar to
cationic peroxidase [Arachis hypogaea]
gi|166475|gb|AAA32676
Length = 371
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHN 149
L +A PGVV+ D V L AIS N P + +VP ++ N
Sbjct: 153 LEAACPGVVSCSDIVALAARDAISLANGP-AYEVPTGRRDGRVSN 196
>At5g39150.1 68418.m04736 germin-like protein, putative similar to
germin -like protein GLP6, Arabidopsis thaliana,
EMBL:ATU75194 [SP|P92997]; contains PS00725 Germin
family signature
Length = 221
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTPP 77
LSS N GV+T DTV TPP
Sbjct: 175 LSSQNAGVITIADTVFGSTPP 195
>At5g39120.1 68418.m04733 germin-like protein, putative similar to
germin -like protein GLP6, Arabidopsis thaliana,
EMBL:ATU75194 [SP|P92997]
Length = 221
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTPP 77
LSS N GV+T DTV TPP
Sbjct: 175 LSSQNAGVITIADTVFGSTPP 195
>At5g39110.1 68418.m04732 germin-like protein, putative nearly
identical to SP|Q9FID0 Germin-like protein subfamily 1
member 14 precursor [Arabidopsis thaliana]
Length = 222
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTPP 77
LSS N GV+T DTV TPP
Sbjct: 176 LSSQNAGVITIADTVFGSTPP 196
>At5g39100.1 68418.m04731 germin-like protein (GLP6) nearly
identical to SP|P92997 Germin-like protein subfamily 1
member 13 precursor {Arabidopsis thaliana}; exon 2
interrupted by a stop codon, creating non-consensus
donor and acceptor splice sites.
Length = 130
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTPP 77
LSS N GV+T DTV TPP
Sbjct: 84 LSSQNAGVITIADTVFGSTPP 104
>At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
(Pectinase) {Agrobacterium tumefaciens}; contains
PF00295: Glycosyl hydrolases family 28
Length = 475
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Frame = -1
Query: 127 RLSGT---CSELGLLGREIAGGVSNVTVSPL 44
R+SGT CS +G+ G E++GG+ N+TV +
Sbjct: 307 RISGTTRTCSGVGI-GSEMSGGIFNITVEDI 336
>At5g46370.1 68418.m05707 outward rectifying potassium channel,
putative (KCO2) identical to KCO2 protein [Arabidopsis
thaliana] gi|6686780|emb|CAB64717; similar to kco1
[Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
family, PMID:11500563
Length = 443
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +3
Query: 72 PPAISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEISTPSNGMFNYESLMDGGT 245
PP++ N + +P+ +TP ++ N + G+ + E S P + + S T
Sbjct: 27 PPSLLTLPENNDVTIPMPITPLELKNRLIFGSFVRSRKESSLPIDALSQNPSTSSSAT 84
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>At4g32610.1 68417.m04643 mitochondrial glycoprotein family protein
/ MAM33 family protein low similarity to SP|P40513
Mitochondrial acidic protein MAM33, mitochondrial
precursor {Saccharomyces cerevisiae}; contains Pfam
profile PF02330: Mitochondrial glycoprotein
Length = 557
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 78 AISRPNRPNSLQVPLSLTPAQIHNNKVLGNSKIAGIEIS 194
A+S+PN+P+SL L P + + V K+ +E+S
Sbjct: 447 AVSKPNQPDSLHFLCGLYPDALGIHSVSMRPKLEALEMS 485
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 86 RPDNFVFGQSGAGNNWAKGH 105
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 87 RPDNFVFGQSGAGNNWAKGH 106
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 285 CACPSGWESTGSTPCPRP 232
C CPSG++ S C RP
Sbjct: 319 CKCPSGYDLNSSMSCTRP 336
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 2 KKDNAVFGQPWRGDEWGYGH 61
+ DN VFGQ G+ W GH
Sbjct: 87 RPDNFVFGQSGAGNNWAKGH 106
>At3g13840.1 68416.m01747 scarecrow transcription factor family
protein
Length = 510
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 21 SANPGVVTSGDTVTLDTPPAISRPN 95
+ N VVT ++ LD PP I +PN
Sbjct: 76 ATNLEVVTEAPSIDLDLPPEIQQPN 100
>At5g38910.1 68418.m04706 germin-like protein, putative similar to
SP|Q9LEA7; contains PS00725 germin family signature
Length = 222
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 15 LSSANPGVVTSGDTVTLDTP 74
LSS NPGV+T DTV P
Sbjct: 175 LSSQNPGVITIADTVFGSNP 194
>At2g03330.1 68415.m00292 expressed protein
Length = 385
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 3 KRIMLSSANPGVVTSGDTVTLDTPPAISRPNRPNSLQVPLSLTPAQIHNNKV 158
+R+ + + G+V D L +P ++ P+ S +PLS+T + +NK+
Sbjct: 25 ERVRVMGSCDGLVCILDHDILISPIIVTNPSMRRSQNLPLSMTQLKYLDNKM 76
>At1g65240.1 68414.m07396 aspartyl protease family protein contains
Pfam PF00026: Eukaryotic aspartyl protease profile;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) [Nicotiana tabacum]
Length = 475
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 126 LTPAQIHNNKVLGNSKIAGIEISTPSNGMFNYESLMDGGTGLTQCFP 266
+ P Q+H N +L + G + P + + N +++D GT L FP
Sbjct: 267 MVPNQMHYNVMLMGMDVDGTSLDLPRSIVRNGGTIVDSGTTLAY-FP 312
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,773
Number of Sequences: 28952
Number of extensions: 208576
Number of successful extensions: 686
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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