Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30407
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.001
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.005
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 36 0.005
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.010
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 35 0.010
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.014
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.018
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.024
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.042
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.056
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.073
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.097
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.22
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.30
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.30
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.30
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 30 0.39
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.52
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.90
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 0.90
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 1.6
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 2.1
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.6
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 26 4.8
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.8
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 26 6.4
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 25 8.4
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
+YV NL S I +FS YGN++++W+ +P A V +E
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRML 260
VYVGN+ + + E++ F+ G++ V + +P GFA++EF +P ++
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLV 109
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 36.3 bits (80), Expect = 0.005
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVE-FEDPRMLKTL 269
VYVGNL ++ +I +FSK G IR + + + P GF FVE FE+ L +L
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 203
D S +YVGN+ + S EI K FSKYG + +++
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Frame = +3
Query: 84 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 248
S ++++ S +Y+GNL + ++ +I +FS++G ++ + R+ GFAF+++ED
Sbjct: 22 SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Query: 249 PRMLKTLFVDLM 284
R L VD M
Sbjct: 82 QRS-TVLAVDNM 92
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.7 bits (76), Expect = 0.014
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +3
Query: 96 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 248
EWD + +++VGNLG + + + + FS+Y ++ V R+ GF FV F+D
Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.018
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Frame = +3
Query: 111 CKVYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDP 251
C ++V NL N + ++E++FSK+G I++ +A P G+ FV F P
Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----------ARNPPGFAFVEFED 248
+YVGNL + ++ ++F +GN + +++P FAF+ FE+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFEN 75
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDP 251
SC VYVGN+ ++ ++ IF + G +++ + + P G+ F E+ DP
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.1 bits (72), Expect = 0.042
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 242
S V++GNL ++ + EIE+ F K+G I ++ + + AFV F
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHF 341
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.056
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFED 248
V+VGNL A + + + F G+I V + R+P GFA+++F+D
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.3 bits (70), Expect = 0.073
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 57 PPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----- 221
P ++K+K + + D ++VGNL ++S ++ F + G + +V + +
Sbjct: 74 PHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQK 133
Query: 222 GFAFVEFEDPR 254
G+AFVEF +P+
Sbjct: 134 GYAFVEFINPK 144
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.9 bits (69), Expect = 0.097
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEF 242
+L ++V + + + E+++IFSK+G + +V + R P GF F+ F
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFED 248
++++ NL + ++ +++ +F +G + V + NP GFA+++F D
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRMLK 263
+C V+VG L N + + F +YG I V + G+ +V+FE P K
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 230
+VYVGNL +E+++ + GN+ N + P G +
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLS 105
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFED 248
+YVGNL S + +F+ G++ +A P GF V+FE+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFEN 329
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.3 bits (65), Expect = 0.30
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 200
+L ++YVG L ++ ++E FS++G++ N+
Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 117 VYVGNLG-TNASKYEIEKIFSKYGNIRNVWVAR--NPPGFAFVEFE 245
++VG L N + Y + +FSKYG + + + P FAF+ F+
Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFD 412
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.52
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVD 278
+++VG + A++ ++ F YG I + + GF FVE ED R + + D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVND 56
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 0.90
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFS-KYGNIRNVWVARNPPGFAFVEFED 248
+YVGNL + S+ E++ +FS + G R + + FVEFE+
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFEN 472
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 28.7 bits (61), Expect = 0.90
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Frame = +3
Query: 66 SIKTKMSRYREWDLSCKV-YVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGF 227
+IK K+S + V YVG L + ++ FS++G + + ++RN +
Sbjct: 89 TIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148
Query: 228 AFVEFEDPRMLKTLFVDLMEHAAVAPGFVSKCQMVAQGETAGHFFN--KPPTHQRPHHIS 401
AF+EFE + + + H + G + +C+++ + + + F P + PH
Sbjct: 149 AFIEFESLDVANVVAETM--HNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATI 206
Query: 402 SQLR 413
++L+
Sbjct: 207 ARLQ 210
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 526 HNNPSHSSHLILNFT*TWELKTHSETSNSRENNQVH*IEYSNG*HIYEVAHT 681
H++ SHS+H + T ++ E ++N + + Y+N H+ + HT
Sbjct: 482 HHHHSHSNHSMCLPNTTNDINIFEEFEEEKDNVEAQKMGYTNDDHVSQHEHT 533
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 658 VNRLSILFSALGCFPYCWRFPNVFS 584
++++ ILFS LG PY +RF + FS
Sbjct: 178 IHQVMILFSDLGGTPYSYRFMDGFS 202
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNV 200
+YV N + +I K+FS YGN+ +V
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDV 695
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDL 281
++VGNL + S + FS YG + ++ + + AF+ F+ K + +L
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEEL 642
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFED 248
+YVGNL + ++ FSK R + + N P FVEFE+
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEE 648
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 73 KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 174
KL +AT + IF + W+TWVL R +K +F
Sbjct: 5 KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 349 QAIFSTNHQHTNDLTTSLHNYGLLTNLT 432
Q I + N+ TTSLH++GL T
Sbjct: 67 QVIIKMTNSLANNRTTSLHSHGLFQKFT 94
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 186 NIRNVWVARNPPGFAFVEFEDPRMLKTLFVDL 281
NI+N WVA P ++ DP + KT + +
Sbjct: 115 NIKNFWVAAMDPIVRLLDDTDPYVRKTAAIGI 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,506
Number of Sequences: 5004
Number of extensions: 63822
Number of successful extensions: 220
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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