Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30407
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 75 5e-14
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 1e-12
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 50 2e-06
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 42 7e-04
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 38 0.008
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 38 0.008
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.011
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 37 0.019
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.078
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 35 0.078
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.078
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34) 32 0.55
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 31 0.73
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 31 0.73
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 0.96
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 31 1.3
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 30 1.7
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.7
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 29 2.9
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 2.9
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 28 6.8
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 28 6.8
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 28 9.0
SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 75.4 bits (177), Expect = 5e-14
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
++ K+YVGNLG NA E+E+ F K+G + VWVARNPPGFAFVE+ED R
Sbjct: 2 MTTKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYR 51
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTRRDR 349
AE++VR LDG C IRVE SN R RDR
Sbjct: 53 AEEAVRELDGANVCDRTIRVEFSNNRGGRDR 83
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/47 (65%), Positives = 38/47 (80%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+VY+GN+G NASK EIE+ F +G +R+VWVARNPPGFAF FED R
Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRR 49
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
AED+VR LDG CG R RVE++ G +R
Sbjct: 51 AEDAVRELDGRYICGQRARVELAKGPSR 78
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 70.9 bits (166), Expect = 1e-12
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
KVY+G+LG NASK EIE F YG +++VWVARNPPGFAF F+D R
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRR 79
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
AED+VR LDG CG R+RVE++ G +R
Sbjct: 81 AEDAVRELDGRYICGQRVRVELAKGPSR 108
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +3
Query: 111 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---PPGFAFVEFEDPR 254
C+VYVGNL + + ++ IF KYG+I +V + P FAFVEFEDPR
Sbjct: 261 CRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPR 311
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 248 PPYAEDSVRGLDGTRCCGTRIRVEMSNGRTRR 343
P AED+V+G DG G RIRVE G + R
Sbjct: 310 PRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGR 341
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
++C+VY+G L ++ ++ + F YG +R++ + N + FVEFED R
Sbjct: 1 MNCRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDR 47
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRMLKTLFVDL 281
++V NL +A + EIE++FSK+G ++ V + N P G+ +VE+E T + L
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTL 231
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 236
L+ VYVGNL + YE++++FS+YG+I V + G+AF+
Sbjct: 613 LNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 37.9 bits (84), Expect = 0.008
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 48 NFYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---- 215
N Y S+ + +R + D K++VG L +K +++ FSKYG + V + +
Sbjct: 8 NGYIGTSLDSNKTRMTKDDDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTG 67
Query: 216 -PPGFAFVEFE 245
P GFAFV+F+
Sbjct: 68 RPRGFAFVQFK 78
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 251
K+YV +L N +K +++IFS YG ++ V + + GFA+VE+ DP
Sbjct: 1158 KLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDP 1208
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 66 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFA 230
+++T + R L C+VYVG++ + I F +G I + ++ +P GFA
Sbjct: 87 ALQTAAQKQRALALMCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFA 146
Query: 231 FVEFEDP 251
FVE++ P
Sbjct: 147 FVEYDLP 153
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 36.7 bits (81), Expect = 0.019
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 111 CKVYVGNLGTN-ASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
C++++GNL T+ ++ ++E+IFS++G + + N F FV+FE
Sbjct: 46 CRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFE 88
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 34.7 bits (76), Expect = 0.078
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDL 281
S +VY G L + + ++EK YG +R + + G+ FVEF+D R DL
Sbjct: 4 STRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADDCVYDL 58
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 34.7 bits (76), Expect = 0.078
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 69 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFV 236
I+ +M++ +E D + +Y+ NL N + +E +FSKYG + + + R N G F
Sbjct: 166 IQAQMAKQQEQDPT-NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFA 224
Query: 237 EFEDPRMLKTLFVDLMEHAAVAPGFVSK 320
E + + D + + PG + +
Sbjct: 225 RMESAEKCEQVIKDF--NKKMLPGCIQE 250
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 34.7 bits (76), Expect = 0.078
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Frame = +3
Query: 75 TKMSRYREWDLS----CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGF 227
+++ +Y +DL CK Y+GNL ++ +++ FS+Y ++ +V V + P GF
Sbjct: 214 SRLLKYSYFDLKMGEECKCYIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGF 272
Query: 228 AFVEFEDPRMLKTLFVDL 281
AFV F + ++ +L
Sbjct: 273 AFVTFGSKKNMEDAINEL 290
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRMLKT 266
D K++VG L + + + F YG + +V V + GF +V F D ++ +
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRN 70
Query: 267 LFVDLMEHAA 296
+ D +E+ A
Sbjct: 71 VLKDKVENGA 80
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 33.1 bits (72), Expect = 0.24
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 69 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 191
+ +S+Y+ CKV+VGN+G E++ F +G++
Sbjct: 65 VSKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYFGDV 105
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFED 248
VYVGNL + + ++ K+F +YG + V + R+ G AF+ F D
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFID 60
>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
Length = 527
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 252 RMLKTLFVDLMEHAAVAPGFVSKCQMVAQGETAGHFFNKPPTHQ-RPHHISSQLRLVNQF 428
R + L D ++ A + + KC +A+ + K P+H+ + H S +R +Q
Sbjct: 156 RKERYLLQDGLDFAIIQVDSLQKCTFLAEHKKISAIQEKNPSHKSKIRHTSQNIRHTSQR 215
Query: 429 DIRDRRSHQHLARLLRSSHPTAACRRRPT 515
+ + H + + +SH R P+
Sbjct: 216 SVTQVKDPSHNSEIRHTSHKYVTQARDPS 244
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNV 200
V+VGNL K ++K FSKYG + +V
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +3
Query: 96 EWDLSCK--VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG--FAFVEFED 248
E+D C ++VGN+ + ++++ F +YG + +V + + P +AFV+F +
Sbjct: 242 EFDPGCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAE 296
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV--ARNPPG--FAFVEFEDPR 254
++VGNL N + +I K F++YG + +V + R+ G +FV+F D R
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIR 57
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 156 EIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDL 281
++EK YG IR++ + R G+ FVEF+D R + DL
Sbjct: 704 DVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDAVHDL 742
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 200
S +V++GNL + ++ ++FSKYG I +
Sbjct: 356 SHQVFIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFV 236
K+Y+GNL N+ + EIE+ F ++G + V + R+ GF FV
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFV 54
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYG---NIRNVW--VARNPPGFAFVEFED 248
V+VGN+ AS+ ++++IFS+ G + R V+ P G+ F E++D
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKD 75
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFED 248
++VGNL T S ++ F K+G + +V + R G +AFV+F D
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFAD 286
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDP 251
VYV N G + ++++I ++ G I ++ V +P GF FV FE P
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETP 159
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFE 245
++V N+ A + +I ++FS YG I+N+ V + G+A VE+E
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYE 342
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFE 245
D+S +++V ++ E+ F +YG ++ + R+ G+AF+ FE
Sbjct: 5 DISKRIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFE 56
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+++VG L ++E +F YG + + + F+E+EDPR
Sbjct: 7 QLFVGRLSKETKLRDLENVFYLYGKLLRCDL---KTAYGFIEYEDPR 50
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 138 TNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPR 254
T AS + + F K+G ++ V R+P GF F+ F+DP+
Sbjct: 117 TQASAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPK 160
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +3
Query: 96 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 242
E ++ K++VG L + ++ + + F+++G + +V++ + F FV F
Sbjct: 194 ELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTF 242
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -1
Query: 304 GATAACSIKSTNRVFSIRGSSNSTNANPGGFRATHTLRMLPYLENIFSISYLDALVPK 131
G T C I + ++ A GFR + L M YLEN+ + ++ + K
Sbjct: 5 GKTDYCVISKVRPLIRSNTVNSKVTAKSRGFRTSKRLAMRTYLENVDVLMWIHSSAAK 62
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEF 242
++VGNL ++ + + S YGNI +++ R + G+ FVE+
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEY 161
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
+S +VY+G L + +++K F YG + + G+ FVEF+
Sbjct: 1 MSNRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILK-DGYGFVEFD 46
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +3
Query: 111 CKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFV 236
C +YV N+G +A++ I +F + G + V W + GF FV
Sbjct: 275 CTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFV 321
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +3
Query: 66 SIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAF 233
SI+ +S E D +Y+ + + K +E +F YG I ++ + R GF +
Sbjct: 49 SIQELLSHKEEHDQRT-IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGY 107
Query: 234 VEFED 248
V +E+
Sbjct: 108 VTYEN 112
>SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 727 VNSCRPLSSLGPTMKPCVPPRRYVNRLSILFSALGCFPY 611
VN C+PL+ +G P + L+IL A G Y
Sbjct: 167 VNECQPLTRIGAPPPLAAPAHEWSTLLTILMQAQGITAY 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,375,934
Number of Sequences: 59808
Number of extensions: 490550
Number of successful extensions: 1377
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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