Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30407
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 71 8e-13
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 71 8e-13
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 71 8e-13
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 50 1e-06
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 50 1e-06
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 44 8e-05
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 41 8e-04
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 41 8e-04
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 41 8e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 41 8e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 41 0.001
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 41 0.001
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 41 0.001
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 36 0.030
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.039
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 35 0.052
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 35 0.052
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 35 0.052
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 35 0.052
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 35 0.052
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 34 0.090
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 34 0.090
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.16
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.16
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 33 0.28
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.28
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 32 0.36
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.36
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 32 0.36
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 32 0.48
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 32 0.48
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 31 0.64
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 31 0.84
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z81497-4|CAB04079.2| 458|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 30 1.5
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 30 1.5
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 1.5
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 30 1.5
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 30 1.5
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 30 1.5
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 30 1.5
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 30 1.5
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 30 1.5
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 1.5
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 1.5
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 1.5
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 30 1.9
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 30 1.9
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 30 1.9
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 3.4
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 29 3.4
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 3.4
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 3.4
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 3.4
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 29 4.5
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 5.9
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 5.9
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 28 5.9
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 28 5.9
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 28 7.8
AF000193-1|AAB52891.1| 715|Caenorhabditis elegans Hypothetical ... 28 7.8
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 28 7.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 70.9 bits (166), Expect = 8e-13
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++D R
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
AED+VR LDG+R CG R RVE+S G+ R
Sbjct: 52 AEDAVRALDGSRICGVRARVELSTGQRR 79
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 70.9 bits (166), Expect = 8e-13
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++D R
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
AED+VR LDG+R CG R RVE+S G+ R
Sbjct: 52 AEDAVRALDGSRICGVRARVELSTGQRR 79
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 70.9 bits (166), Expect = 8e-13
Identities = 29/50 (58%), Positives = 39/50 (78%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE++D R
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
AED+VR LDG+R CG R RVE+S G+ R
Sbjct: 52 AEDAVRALDGSRICGVRARVELSTGQRR 79
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPR 254
KVYVGNL + + E+E IF KYG I+ V + + P FAFVEFED R
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHR 57
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNG 331
AED+VR DG G RIRVE + G
Sbjct: 59 AEDAVRARDGYEFDGRRIRVEFTRG 83
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPR 254
KVYVGNL + + E+E IF KYG I+ V + + P FAFVEFED R
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHR 57
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNG 331
AED+VR DG G RIRVE + G
Sbjct: 59 AEDAVRARDGYEFDGRRIRVEFTRG 83
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 11/55 (20%)
Frame = +3
Query: 114 KVYVGNLGTNASKYE-----------IEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
+VYVGN+ +A++ E IE +FS G I+++W+A+ PPGFAFV F+
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFK 72
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDL 281
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+D R + DL
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDL 56
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDL 281
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+D R + DL
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDL 56
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDL 281
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVEF+D R + DL
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDL 56
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 41.1 bits (92), Expect = 8e-04
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDLMEHA 293
++Y+G + NA + ++E+ YG I N+ + GFAFV+FED R + DL +
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDL-DGK 58
Query: 294 AVAPGFVSKCQMVAQGETAG---HFFNKPPTHQRPHHISSQLRLVNQFDIRDR-RSHQHL 461
+ + +A+G+ G H P R S+ + RDR RS +
Sbjct: 59 TMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSR 118
Query: 462 AR-LLRSSHPTAACRRR 509
+R RS P RRR
Sbjct: 119 SRSSSRSRSPVRESRRR 135
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 41.1 bits (92), Expect = 8e-04
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDLMEHA 293
++Y+G + NA + ++E+ YG I N+ + GFAFV+FED R + DL +
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDL-DGK 58
Query: 294 AVAPGFVSKCQMVAQGETAG---HFFNKPPTHQRPHHISSQLRLVNQFDIRDR-RSHQHL 461
+ + +A+G+ G H P R S+ + RDR RS +
Sbjct: 59 TMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSR 118
Query: 462 AR-LLRSSHPTAACRRR 509
+R RS P RRR
Sbjct: 119 SRSSSRSRSPVRESRRR 135
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 41.1 bits (92), Expect = 8e-04
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKTLFVDLMEHA 293
++Y+G + NA + ++E+ YG I N+ + GFAFV+FED R + DL +
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDL-DGK 58
Query: 294 AVAPGFVSKCQMVAQGETAG---HFFNKPPTHQRPHHISSQLRLVNQFDIRDR-RSHQHL 461
+ + +A+G+ G H P R S+ + RDR RS +
Sbjct: 59 TMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSR 118
Query: 462 AR-LLRSSHPTAACRRR 509
+R RS P RRR
Sbjct: 119 SRSSSRSRSPVRESRRR 135
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFEDPRMLKT 266
VYV N G + +K +EK+F+K+GNI + + V GF FV F +P +T
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 267
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDP 251
+YV NL ++K F YGNI + V + GF FV FE P
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKP 367
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFEDPRMLKT 266
VYV N G + +K +EK+F+K+GNI + + V GF FV F +P +T
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 207
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDP 251
+YV NL ++K F YGNI + V + GF FV FE P
Sbjct: 259 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKP 307
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFEDPRMLKT 266
VYV N G + +K +EK+F+K+GNI + + V GF FV F +P +T
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 204
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDP 251
+YV NL ++K F YGNI + V + GF FV FE P
Sbjct: 256 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKP 304
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVEFEDPRMLKT 266
VYV N G + +K +EK+F+K+GNI + + V GF FV F +P +T
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 267
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDP 251
+YV NL ++K F YGNI + V + GF FV FE P
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKP 367
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+VY+G L AS ++E F YG + +V + +N GF FV+F+D R
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQR 46
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 248
V+VGN+ + S+ I IFSK GN+ ++ + + P G+ F+EF D
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPD 68
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEF 242
SC +YVGNL + ++ ++F + G++R V + + P GF FVE+
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEY 85
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 248
VYVGN+ ++ EI F+ G++ NV + + P GFAFVEF +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSE 56
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +3
Query: 78 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 242
K S ++ + S +Y+G L S+ ++ +FS+YG + N+ + R+ GFAF+ +
Sbjct: 27 KKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCY 86
Query: 243 EDPR 254
+D R
Sbjct: 87 KDQR 90
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFED 248
VYVGN ++ ++ FS+ GN+ NV + P GFAFVEF +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTE 54
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 248
VYVGN ++ E+ FS G I NV + + P GFAF+EF +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAE 55
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 35.1 bits (77), Expect = 0.052
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Frame = +3
Query: 57 PPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPP 221
PP S S + S +Y+ L N + + ++ SKYGNI + N
Sbjct: 89 PPTSQHRASSNFNTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCK 148
Query: 222 GFAFVEFEDPRMLKTLFVDLMEHAAVAPGFVSKCQMVAQGETAGHFFNKP 371
G+ FV+FE P+ L A ++K Q Q T + N P
Sbjct: 149 GYGFVDFESPQAAAAAVDGLNTEGVQAQ--MAKLQQQEQDPTNLYIANLP 196
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 35.1 bits (77), Expect = 0.052
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +3
Query: 111 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
C+++VGNL + E++++FS +G+I +++ GFAF+ +
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLD 158
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 35.1 bits (77), Expect = 0.052
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +3
Query: 111 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
C+++VGNL + E++++FS +G+I +++ GFAF+ +
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLD 158
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFED 248
VYVGN+ A+ EIE+ F G++ V + + +P GFA+VEF +
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTE 128
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +3
Query: 78 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 242
++ R R + +C+V NL ++ E+ +F K G + +++AR+ P GFAFV F
Sbjct: 167 QIDRNRSDENTCRVT--NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
Query: 243 E 245
E
Sbjct: 225 E 225
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 34.3 bits (75), Expect = 0.090
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +3
Query: 111 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 236
C+++VGNL + E++++FS +G+I +++ GFAF+
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFL 155
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
++ NL +A+ +E +F+++ ++++ + N PG AFVEF+
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPGFAFVEFEDPRMLKTLF 272
++VG + S+ ++ + F YG I+ + + A P G+AF+E+ D + T +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAY 161
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
VYVGN+ + ++ +FS YG+I V + + +AFV +E
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKT-QRYAFVRYE 280
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFE 245
KV+V N+ A+ E++ +FSK+G + +V + P G AFV+F+
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFD 731
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 248
V+V N G + + ++ +FSK+G I + V + P GF FV F D
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFAD 287
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 248
V+V N G + + ++ +FSK+G I + V + P GF FV F D
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFAD 287
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 242
K++VG L +N + + + +S++G I ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 242
K++VG L +N + + + +S++G I ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEF 242
K++VG L +N + + + +S++G I ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDP 251
K+++G L + + F ++G + V R+P GF F+ F DP
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDP 96
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDP 251
K+++G L + + F ++G + V R+P GF F+ F DP
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDP 96
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 200
+V + NL N K +E+IFS YG I+NV
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNV 162
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRMLKTLF 272
S +Y+ L N + + ++ SKYGNI + N G+ FV+FE P+
Sbjct: 80 STNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAV 139
Query: 273 VDLMEHAAVAPGFVSKCQMVAQGETAGHFFNKP 371
L A ++K Q Q T + N P
Sbjct: 140 DGLNTEGVQAQ--MAKLQQQEQDPTNLYIANLP 170
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 54 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP--- 221
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 222 -GFAFVEF 242
+A+VEF
Sbjct: 204 CAYAYVEF 211
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +3
Query: 54 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP--- 221
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 222 -GFAFVEF 242
+A+VEF
Sbjct: 204 CAYAYVEF 211
>Z81497-4|CAB04079.2| 458|Caenorhabditis elegans Hypothetical
protein F10C2.7 protein.
Length = 458
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -3
Query: 401 RDVVRSLVCWWFVEKMACGLS--LCDHLTFRHESWCHSSVFHQVHEQSLQHTGVFEFYKC 228
R + V WF + GL+ +C L + SW ++SV +L T FYKC
Sbjct: 308 RQFLSERVRMWFFNTSSVGLAGFMCVSLAYIPVSWKYTSVIMFSIVYTLMGTNCGGFYKC 367
Query: 227 KSGRISSYPYVTYV 186
G +S Y +V
Sbjct: 368 --GTFASRQYAHFV 379
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEK----IFSKYGNIRNVWVARNPPGFAFVEF 242
+Y+GNLG + ++ EK F +YG+IR + V G AF+EF
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVL-TEKGCAFIEF 281
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRMLKTLFVDL 281
K+++G L ++ + +IF+K+G+I + V R+ G AFV F + R +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTN-RSCAVVATKE 201
Query: 282 MEHAAVAPG 308
M H+ G
Sbjct: 202 MHHSQTMEG 210
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRM 257
D + K+++G L ++ +++++ +G ++ NV N G+AF E+ DP +
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTL 343
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
++ N+ +I+ IFS++ +R V N FAF+E+E
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYE 187
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRMLKTLFVDL 281
K+++G L ++ + +IF+K+G+I + V R+ G AFV F + R +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTN-RSCAVVATKE 201
Query: 282 MEHAAVAPG 308
M H+ G
Sbjct: 202 MHHSQTMEG 210
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRMLKTLFVDL 281
K+++G L ++ + +IF+K+G+I + V R+ G AFV F + R +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTN-RSCAVVATKE 201
Query: 282 MEHAAVAPG 308
M H+ G
Sbjct: 202 MHHSQTMEG 210
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRMLKTLFVDL 281
K+++G L ++ + +IF+K+G+I + V R+ G AFV F + R +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTN-RSCAVVATKE 201
Query: 282 MEHAAVAPG 308
M H+ G
Sbjct: 202 MHHSQTMEG 210
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRMLKTLFVDL 281
K+++G L ++ + +IF+K+G+I + V R+ G AFV F + R +
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTN-RSCAVVATKE 201
Query: 282 MEHAAVAPG 308
M H+ G
Sbjct: 202 MHHSQTMEG 210
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 245
VYVGN+ ++ EIE+ F+ G + V + ++ FAFVEF+
Sbjct: 48 VYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQ 95
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRM 257
D + K+++G L ++ +++++ +G ++ NV N G+AF E+ DP +
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTL 343
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRM 257
D + K+++G L ++ +++++ +G ++ NV N G+AF E+ DP +
Sbjct: 263 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTL 318
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIR----NVWVARNPPGFAFVEFEDPRM 257
D + K+++G L ++ +++++ +G ++ NV N G+AF E+ DP +
Sbjct: 266 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTL 321
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNI---RNVWVARNPPGFAFVEFED 248
+YVGNL + ++ I +F++ G++ + ++ N P +AFVEF D
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP-YAFVEFSD 93
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRMLKTLFV 275
V++GN+ N++ EIE+ F G I + + FA++EF+D ++ V
Sbjct: 57 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALV 114
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRMLKTLFV 275
V++GN+ N++ E+E+ F G+I + + FA++EF+D ++ V
Sbjct: 63 VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALV 120
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 224
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 224
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFED 248
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNN 257
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFED 248
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNN 257
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFED 248
+VYV ++ + S+ +++ +F +G I +AR P GF ++EF +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNN 257
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFE 245
V+V N+ A++ ++ FS+YG I+N+ + + G+A VE+E
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYE 104
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 721 SCRPLSSLGPTMKPCVPPRRYVNR 650
S PL + PTM P PPR+ + R
Sbjct: 319 SADPLQNSSPTMSPIAPPRKRLGR 342
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 721 SCRPLSSLGPTMKPCVPPRRYVNR 650
S PL + PTM P PPR+ + R
Sbjct: 319 SADPLQNSSPTMSPIAPPRKRLGR 342
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 215
S KV+VG L + + +I FS+YG ++ W +++
Sbjct: 87 SRKVFVGGLPSCVKESDILNFFSRYGRLQVDWPSKH 122
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 242
K++VG + + ++ F++YG + V + GFAFVEF
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 242
K++VG + + ++ F++YG + V + GFAFVEF
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 51 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPP 221
F P S+K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 32 FTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK 90
Query: 222 GFAFVEFE 245
GF FV +
Sbjct: 91 GFGFVTLD 98
>AF000193-1|AAB52891.1| 715|Caenorhabditis elegans Hypothetical
protein T20B6.2 protein.
Length = 715
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -1
Query: 379 CVGGLLKKWPAVSPCATI*HFDTNPGATAACSIKSTNRVFSIRGSSNSTNANPGGFRATH 200
C+G + KWP V ++ H N ++ S ++ +SN + G R +
Sbjct: 245 CLGNITNKWPIVQKAVSVVHQVRN---LTQQTVSSAGKIVEAVSNSNLKSLQVSGNRMRN 301
Query: 199 -TLRMLPYLENIFSISYLDAL 140
T+R L++ F S +AL
Sbjct: 302 VTIREALALKSSFPNSQKNAL 322
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 51 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPP 221
F P S+K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 32 FTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK 90
Query: 222 GFAFVEFE 245
GF FV +
Sbjct: 91 GFGFVTLD 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,476
Number of Sequences: 27780
Number of extensions: 364712
Number of successful extensions: 1124
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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