Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30407
(733 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.7
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.7
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 22 5.2
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 22 5.2
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 9.0
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 9.0
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 9.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 9.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 9.0
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 21 9.0
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 9.0
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 214 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 95
FR+ T +M P+++ +F LV + P Y + +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 214 FRATHTLRMLPYLENIFSISYLDALVPKLPTYTLQERSHS 95
FR+ T +M P+++ +F LV + P Y + +S
Sbjct: 333 FRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNRYS 372
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 22.2 bits (45), Expect = 5.2
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 289 TLLWHQDSCRNVKWSHKERPQAIFSTNHQHTNDLTTSLHNYGLLTNLTSAIAAR 450
TL+W ++ + +R Q I N Q + L + L+N LL +++ A +
Sbjct: 642 TLVWMIIEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYN-ALLILISTVYAVK 694
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 22.2 bits (45), Expect = 5.2
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 289 TLLWHQDSCRNVKWSHKERPQAIFSTNHQHTNDLTTSLHNYGLLTNLTSAIAAR 450
TL+W ++ + +R Q I N Q + L + L+N LL +++ A +
Sbjct: 732 TLVWMIIEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYN-ALLILISTVYAVK 784
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 57 PPFSIKTKMSRYREWDLSCKVY 122
P I + M R W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 485 PNCCVQTKTNNC 520
PN C T TN C
Sbjct: 432 PNPCTHTTTNGC 443
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 485 PNCCVQTKTNNC 520
PN C T TN C
Sbjct: 418 PNPCTHTTTNGC 429
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 485 PNCCVQTKTNNC 520
PN C T TN C
Sbjct: 452 PNPCTHTTTNGC 463
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2
Query: 485 PNCCVQTKTNNC 520
PN C T TN C
Sbjct: 401 PNPCTHTTTNGC 412
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 112 AKCTWATWVLMRLNMK 159
+KCTW R+N+K
Sbjct: 68 SKCTWTITSYHRINLK 83
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 57 PPFSIKTKMSRYREWDLSCKVY 122
P I + M R W++ C VY
Sbjct: 111 PMLVISSFMERMIGWEIGCDVY 132
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,879
Number of Sequences: 438
Number of extensions: 4551
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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