Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30407
(733 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 65 5e-11
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 64 1e-10
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 64 1e-10
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 62 3e-10
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 53 2e-07
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 50 2e-06
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 50 2e-06
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 49 4e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 48 6e-06
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 45 6e-05
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 40 0.002
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.003
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.004
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.004
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.007
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 38 0.007
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.009
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.009
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 37 0.012
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 37 0.012
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 37 0.016
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 36 0.021
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 36 0.021
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 36 0.021
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 36 0.021
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 36 0.021
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.021
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 36 0.028
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 36 0.028
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 36 0.028
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 36 0.037
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 36 0.037
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 36 0.037
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.037
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 35 0.048
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 35 0.048
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.048
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 35 0.064
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.064
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 35 0.064
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 34 0.085
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 34 0.085
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 34 0.085
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 34 0.11
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 34 0.11
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 34 0.11
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.15
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 33 0.15
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.20
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.20
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 33 0.26
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.26
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 33 0.26
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 33 0.26
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 32 0.34
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 32 0.34
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.45
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 32 0.45
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 32 0.45
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 32 0.45
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.45
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 32 0.45
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 32 0.45
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.60
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 31 0.60
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.60
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 31 0.60
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 31 0.79
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 31 0.79
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 31 0.79
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.79
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 1.0
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 1.0
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 31 1.0
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 31 1.0
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 31 1.0
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 31 1.0
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 30 1.4
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 1.4
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 1.4
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 30 1.4
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 30 1.4
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 30 1.8
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 30 1.8
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 30 1.8
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 30 1.8
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 30 1.8
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 2.4
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 29 2.4
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 29 2.4
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 2.4
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 3.2
At5g16300.1 68418.m01905 expressed protein 29 3.2
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.2
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 3.2
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 4.2
At5g12080.2 68418.m01415 mechanosensitive ion channel domain-con... 29 4.2
At5g12080.1 68418.m01414 mechanosensitive ion channel domain-con... 29 4.2
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 4.2
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 4.2
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 28 5.6
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 28 5.6
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 7.3
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 7.3
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 28 7.3
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 28 7.3
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 7.3
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 28 7.3
At5g16300.2 68418.m01906 expressed protein 27 9.7
At1g71930.1 68414.m08315 no apical meristem (NAM) family protein... 27 9.7
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 27 9.7
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+VYVGNL ++ E+E F +G +R+VWVAR PPG+AF++FEDPR
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPR 49
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+D R
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDER 49
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+D R
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDER 49
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
+VYVGNL ++ E+E F +G IR+VWVAR PPG+AF++FED R
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSR 49
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPR 254
+YVGNL + K E+E +F KYG I ++ + PPG+AFVEFEDPR
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPR 56
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 248 PPYAEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
P A+D++ G DG G R+RVE+++G R
Sbjct: 55 PRDADDAIYGRDGYDFDGCRLRVEIAHGGRR 85
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPR 254
+YVGNL + + E+E +FSKYG + + + PPG+AFVEFED R
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDAR 56
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPR 254
+YVGNL + + E+E +FSKYG + + + PPG+AFVEFED R
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDAR 56
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPR 254
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D R
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDAR 56
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
AED++ G DG G R+RVE+++G R
Sbjct: 58 AEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPR 254
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D R
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDAR 56
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
AED++ G DG G R+RVE+++G R
Sbjct: 58 AEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPR 254
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D R
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDAR 56
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSNGRTR 340
AED++ G DG G R+RVE+++G R
Sbjct: 58 AEDAIHGRDGYDFDGHRLRVELAHGGRR 85
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +3
Query: 81 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF DPR
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPR 55
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +3
Query: 81 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF DPR
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPR 55
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPR 254
S +YVGNL + ++EIE IF KYG I ++ V PP + FVEFE R
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSR 56
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +2
Query: 257 AEDSVRGLDGTRCCGTRIRVEMSN---GRTRRDRR 352
AED+++G DG G R+RVE+++ G++ DRR
Sbjct: 58 AEDAIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR 92
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
VYVGN + ++E++FSK+G ++ V + G+AFV FED R
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDER 46
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRM 257
+Y+G + + EIE FS++G ++ V VARN F F++FEDP +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEV 113
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFE 245
L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++E
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYE 154
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFE 245
L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++E
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYE 154
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRMLKT 266
D KVYVGNL +K +E +FS+ G + + V+R P GF FV F ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 267 LFVDL 281
V L
Sbjct: 234 AIVAL 238
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEF 242
++YVGNL N S+ ++ K+F +G++ V V R+ GF FV+F
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQF 332
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +3
Query: 150 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFED 248
K ++++ SK+G + +++V +N GF ++ FE+
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFEN 520
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +3
Query: 87 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEFEDP 251
R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F D
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 252 R 254
R
Sbjct: 64 R 64
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +3
Query: 87 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEFEDP 251
R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F D
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDR 63
Query: 252 R 254
R
Sbjct: 64 R 64
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKT 266
D C ++VG L + ++ + ++ SKYG I+N+ + R+ G+ FVE+E + +
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLR 120
Query: 267 LFVD 278
+ D
Sbjct: 121 AYED 124
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +3
Query: 93 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 251
R DL + V NL + + ++ K F ++G ++++++ R+ P GF FV+F DP
Sbjct: 30 RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDP 87
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
V+VGN + ++E++F KYG + V + G+AFV FED R
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDER 46
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 150 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
+++IEK F YG + NV + RN F+FV+FE
Sbjct: 107 EHDIEKHFEPYGKVTNVRIRRN---FSFVQFE 135
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = +3
Query: 87 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 215
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = +3
Query: 87 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 215
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 36.3 bits (80), Expect = 0.021
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Frame = +3
Query: 69 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAF 233
I + S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+ GFAF
Sbjct: 22 ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAF 81
Query: 234 VEFEDPRMLKTLFVDLMEHAAV 299
+ +ED R L VD + A V
Sbjct: 82 LAYEDQRS-TILAVDNLNGALV 102
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLFVD 278
K+++G L + + K F KYG I + + R+ P GF F+ F DP ++ + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTL 269
K++VG + + ++ E++ F+KYGN+ V R+ GF FV F+ ++ L
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLFVD 278
K+++G L + + K F KYG I + + R+ P GF F+ F DP ++ + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTL 269
K++VG + + ++ E++ F+KYGN+ V R+ GF FV F+ ++ L
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRM 257
K+YV L +K E+ ++FS+YG I ++++A + G+AFV+F M
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEM 259
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 200
K+YV + A++Y+I ++F KYGN+ +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
V+ GN +A + ++E++F KYG + V + GFAFV ED R
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDER 46
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
V+ GN +A + ++E++F KYG + V + GFAFV ED R
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDER 46
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 93 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 251
R+ DL + V NL + + ++ + F ++G ++++++ R+ P GF F++F DP
Sbjct: 31 RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDP 88
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLK 263
++V NL ++ S E+ IFS YG IR V + ++EF D R K
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAK 345
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
V+ GN +A + ++E++F KYG + V + GFAFV ED R
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDER 46
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 141 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
N ++EK F YG I NV + RN FAF+++E
Sbjct: 108 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYE 139
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLFVD 278
K+++G + + + + + FS +G + V V R P GF FV F DP ++ + D
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.5 bits (78), Expect = 0.037
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +3
Query: 78 KMSRYREWDLSC----KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR 212
++ R D SC K++VG L N S+ E++ +FS+YG I+++ + R
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 123 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
VGN+ +N YE++ +F ++G+I+ + A GF V + D R
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIR 264
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 123 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
V NL ++ S E+ ++ YG ++ + + ++EF D R
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVR 349
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 35.1 bits (77), Expect = 0.048
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +3
Query: 51 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-- 224
F PF K + + VYV NL + E++ F +YG+I + V R+ G
Sbjct: 205 FVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKS 264
Query: 225 --FAFVEFEDP 251
F FV FE+P
Sbjct: 265 RCFGFVNFENP 275
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 224
+YV NL + ++ ++F+++G I + V R+P G
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG 365
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.1 bits (77), Expect = 0.048
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR 212
L K++VG L N S+ E++ +FS+YG I+++ + R
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 34.7 bits (76), Expect = 0.064
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPGFAFVEFED 248
+YV NL N + E+ IF KYG IR + + + G AFV +ED
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYED 66
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.064
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEF 242
K+YVGNL N S+ ++ +IF +G + V + +P GF F++F
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 174 SKYGNIRNVWVARNPPGFAFVEFE 245
SKYG + +++V +N GF ++ F+
Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQ 489
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 34.7 bits (76), Expect = 0.064
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +3
Query: 78 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 245
+++R+ E +Y+ NL + +++++FS+YGN+ + V NP GF FV +
Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 246 DP 251
+P
Sbjct: 381 NP 382
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFE 245
VYV NL + E+ K F K+G I + V R+ G F FV FE
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE 277
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKT 266
D + K++VG L + E K F KYG I + + ++ P GF FV + D ++
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDK 98
Query: 267 LFVD 278
+ D
Sbjct: 99 VIQD 102
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 34.3 bits (75), Expect = 0.085
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
++V N+ +N E+ +F +YG+IR ++ GF + + D R
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIR 215
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 34.3 bits (75), Expect = 0.085
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
++V N+ +N E+ +F +YG+IR ++ GF + + D R
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIR 215
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRML 260
K++VG + + ++ + F+ YG + V R+ P GF FV F DP +L
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +3
Query: 123 VGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 248
V N+ + E+ + F ++G +R+V++ R+ P GFAFVEF D
Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVD 97
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDP 251
VYV NL + E++K F KYG+I + V ++ G F FV F P
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +3
Query: 78 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFE 245
++SR+ + S +Y+ NL + + +++++FS+YGN+ + V N GF FV +
Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYS 376
Query: 246 DP 251
+P
Sbjct: 377 NP 378
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLFVD 278
K+++G + + + +++ F KYG++ + R+ GF F+ F DP + + + +D
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFED 248
C V V NL ++ + ++ +FS YGNI + + RN P A V+ D
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGD 291
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRMLKTLFVD 278
+++VG+L AS+ +++K+F G + V + +NP G AF+ F K +
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 279 L 281
L
Sbjct: 275 L 275
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 111 CK-VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 242
CK ++VG +G N SK ++E+ FSK+G I + R AF+++
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDY 292
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEF 242
S ++VG+L ++ ++ ++F +YG+I + V + GFAF+ +
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYY 60
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 123 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPR 254
V NL + S ++E IF YG I+ + N FVEF D R
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVR 269
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 298 TAACSIKSTNRVFSIRGSSNSTNANPGGFRATHTLRMLPYLENIFSISYLD 146
+A ++K+ NR ++ PGG R L+M P LE S SYL+
Sbjct: 270 SADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELEQDDSYSYLN 320
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEF-EDPRMLKTL 269
K++VG + S+ +++ FS+YG + VA+ P GF FV F D ++K L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL 64
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFED 248
+++ NL + ++ +F +Y + + + PG AFVE+ED
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYED 199
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFED 248
+++ NL + ++ +F +Y + + + PG AFVE+ED
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYED 200
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 93 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 248
R +D + ++YVGNL + +E++FS++G + + V + GF FV+ +
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSN 257
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 32.3 bits (70), Expect = 0.34
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN--PPGFAFVEFEDPRMLKTLFVDLM 284
+YV NL + ++E++FS++G I + V V N G FVEF + +
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 285 -EHAAVAPGFVSKCQMVAQGE--TAGHFFNKPPT-HQRP 389
+ P +VS Q Q + F N PP+ HQ+P
Sbjct: 285 GKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSPHQQP 323
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEF 242
S +YVGN+ + E+++ F G + V + + P GFA+VEF
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF 150
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLF 272
SCK+++G + S+ + F +G + + ++ GF FV F DP + +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER-- 62
Query: 273 VDLMEH 290
V L++H
Sbjct: 63 VVLLKH 68
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLF 272
SCK+++G + S+ + F +G + + ++ GF FV F DP + +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER-- 62
Query: 273 VDLMEH 290
V L++H
Sbjct: 63 VVLLKH 68
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDP 251
S +YV NL + S ++++IFS +G + + V R+P G FV F P
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 182
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 248
VYV NL + + +++ F +YG I + V ++ GF FV FE+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFEN 78
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 245
+C VY+GN+ S + I + G + ++ + R+ P GFAF E+E
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYE 56
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLF 272
++V L +S+ +I++ F YG I+ V + + P G+AF+E+ R +K +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAY 196
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFED 248
VYV NL + S E+ K+F ++G + + R+ GF FV FE+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFEN 273
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRMLK 263
S VYV NL + + +FS+YG + +V V R+ GF FV F +P K
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAK 256
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFED 248
++V NL + ++ +F +Y + V + PG AFVEF D
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFAD 222
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFED 248
+++ NL + ++ +F +Y + + + PG AFVE+ED
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYED 203
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 31.5 bits (68), Expect = 0.60
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLFVD 278
KV+VG L + + F +YG+I V + G+ FV F DP + VD
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 279 LMEHAAVAPGFVSKCQMVAQGET 347
+ G + C + + G +
Sbjct: 85 ---PTPIIDGRRANCNLASLGRS 104
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 96 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRML 260
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP +
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 261 KTLFVD 278
+ + +D
Sbjct: 61 ERVIMD 66
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 96 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRML 260
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP +
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 261 KTLFVD 278
+ + +D
Sbjct: 61 ERVIMD 66
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 96 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRML 260
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP +
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 261 KTLFVD 278
+ + +D
Sbjct: 61 ERVIMD 66
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +3
Query: 105 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEF 242
++ +VYVGNL + + + FS YGN+ + V R+ GF FV +
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTY 51
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFED 248
VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFED
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFED 308
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFED 248
VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFED
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFED 367
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN---PPGFAFVEFEDPRML 260
+++VG L + ++E+ FS++G+I + + + R+ GF F+ F D R +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAM 61
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 141 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFE 245
N ++EK F YG I NV + RN FAF+++E
Sbjct: 67 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYE 98
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 108 SCK-VYVGNLGTNASKYEIEKIFSKYGNIR-NVWVARNPPGFAFVEFEDPRMLKTLFVDL 281
+C+ VYVGN+ T ++ +++IF+ G + + + ++ + FV + D R + L
Sbjct: 57 TCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSL 116
Query: 282 M-EHAAVAPGFVSKCQMVAQGE-TAGHF 359
H P V+ Q E T+ HF
Sbjct: 117 NGRHLFGQPIKVNWAYATGQREDTSSHF 144
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVAR---NPPGFAFVEF 242
S K++VG + + ++ + + FSKYG + + V R GFAFV F
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +3
Query: 108 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEF 242
S VY+GN+ ++ ++ ++FS+ G I+ + + + P GF FV F
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLF 82
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEF 242
VYVGN+ + E++ F G + V + + P GFA+VEF
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEF 242
VYVGN+ + E++ F G + V + + P GFA+VEF
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 129 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKT 266
N+ T S E+ ++F YG IR + N F+E+ D R +T
Sbjct: 276 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAET 321
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 129 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRMLKT 266
N+ T S E+ ++F YG IR + N F+E+ D R +T
Sbjct: 289 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAET 334
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +3
Query: 93 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 248
R ++ + +VYVGNL + +E++FS++G + V + GF FV D
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIR------NVWVARNPPGFAFVEFEDPRMLKTLFV 275
K+YV N+G ++ FSK+G I + + R P GF ++ K
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGR-PKGFCLFVYKSSESAKRA-- 302
Query: 276 DLMEHAAVAPGFVSKCQMVAQGETAGHFFNKPPTHQRPH 392
L E G + CQ G G + H PH
Sbjct: 303 -LEEPHKTFEGHILHCQKAIDGPKPG---KQQQHHHNPH 337
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIR------NVWVARNPPGFAFVEFEDPRMLKTLFV 275
K+YV N+G ++ FSK+G I + + R P GF ++ K
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGR-PKGFCLFVYKSSESAKRA-- 302
Query: 276 DLMEHAAVAPGFVSKCQMVAQGETAGHFFNKPPTHQRPH 392
L E G + CQ G G + H PH
Sbjct: 303 -LEEPHKTFEGHILHCQKAIDGPKPG---KQQQHHHNPH 337
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIR------NVWVARNPPGFAFVEFEDPRMLKTLFV 275
K+YV N+G ++ FSK+G I + + R P GF ++ K
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGR-PKGFCLFVYKSSESAKRA-- 302
Query: 276 DLMEHAAVAPGFVSKCQMVAQGETAGHFFNKPPTHQRPH 392
L E G + CQ G G + H PH
Sbjct: 303 -LEEPHKTFEGHILHCQKAIDGPKPG---KQQQHHHNPH 337
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 29.9 bits (64), Expect = 1.8
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRMLKTLFVDLMEH 290
VYVGNL S+ ++ + F G I V V R+ GF FV + + L + +
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRY-STHVEAALAIQMGNT 319
Query: 291 AAVAPGFVSKCQMVAQGETAGHFFNK-PPTHQRP 389
+ G KC ++ AG N PP P
Sbjct: 320 HSYLSGRQMKCSWGSKPTPAGTASNPLPPPAPAP 353
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEF 242
+++VG LG + + ++ KIFS G + V +V FA+++F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFED 248
+++GNLG N ++ E+ + S + + + R F+EFED
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFED 279
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFED 248
+++ NLG N ++ E++++ S+Y + + AR AF +FE+
Sbjct: 225 LFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEE 269
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFE 245
K+YV L ++ + F ++GN+ ++ VA P GFAF+ +E
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYE 126
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 218
V+VGNL K I K FSK+G + +V + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g16300.1 68418.m01905 expressed protein
Length = 1068
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1
Query: 346 VSPCATI*HFDTNPGATAACSIKSTNRVFSIRGSSNSTNA 227
+ PC+T+ F P + A S +STN+V SI +SN +A
Sbjct: 947 IMPCSTVPRFKYLPISAPALSSRSTNKV-SIPVTSNDASA 985
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFED 248
+VY+GNL + ++ +I K+FS I +V + +N G+A V+F+D
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKD 311
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPR 254
KV+VG L + K + F KYG+I + R G+ FV F+D +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAK 69
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPG--FAFVEFEDPRMLKTLFVDLM 284
VYVG L + ++ + ++FS YG++ V + R+ G + FV F + R D M
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIED-M 67
Query: 285 EHAAVAPGFVSKCQMVAQGETAGHFFNKPPTHQRPH 392
+ ++ + V T G N P +PH
Sbjct: 68 DGKSIG----GRAVRVNDVTTRGGRMNPGPGRLQPH 99
>At5g12080.2 68418.m01415 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 734
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 1 VVASD*KIKFSEIL*IIFIHPFQSKLRCLATENGIFLAKCTWATWVLMRLNMK*KKYFLN 180
++ S K F I+ + +HP+ RC+ + + + T V ++LN + K Y+ N
Sbjct: 554 IIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNE-KVYYPN 612
Query: 181 TV 186
V
Sbjct: 613 AV 614
>At5g12080.1 68418.m01414 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 734
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 1 VVASD*KIKFSEIL*IIFIHPFQSKLRCLATENGIFLAKCTWATWVLMRLNMK*KKYFLN 180
++ S K F I+ + +HP+ RC+ + + + T V ++LN + K Y+ N
Sbjct: 554 IIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNE-KVYYPN 612
Query: 181 TV 186
V
Sbjct: 613 AV 614
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFE 245
+Y+ NL S+ + +FS +G + +A++ GFAF+EFE
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFE 65
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLKTLFVD 278
KV+VG L + + F +YG I V + G+ FV F DP + D
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLK 263
D+ + +VG L +E F++YG++ + + + GF FV F+D + +K
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +3
Query: 102 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRMLK 263
D+ + +VG L +E F++YG++ + + + GF FV F+D + +K
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV 206
K++VGNL N ++ ++F GN+ V V
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV 206
K++VGNL N ++ ++F GN+ V V
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 484 TQLLRADEDQQLRPHNNPSHSSHLILNFT*T--WELKTHSETSNSRENNQVH*IE 642
T+ + + DQ L HN P +SH N + T E++ ET N++H +E
Sbjct: 416 TEQVSTEPDQTLPQHNLPVENSHAYANMSETKLEEMRKSLETHLEILRNRLHFLE 470
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +3
Query: 114 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRMLKTLFVD 278
+VYVGNL +E +FS+ G + V + GF FV ++ + ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 279 L 281
L
Sbjct: 265 L 265
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEF 242
VYVGNL ++ ++ ++F G I V V R+ GF FV +
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRY 317
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 117 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEF 242
VYVGNL ++ ++ ++F G I V V R+ GF FV +
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRY 313
>At5g16300.2 68418.m01906 expressed protein
Length = 1034
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 346 VSPCATI*HFDTNPGATAACSIKSTNRVFSIRGSSNSTN 230
+ PC+T+ F P + A S +STN+V SI +SN +
Sbjct: 947 IMPCSTVPRFKYLPISAPALSSRSTNKV-SIPVTSNDAS 984
>At1g71930.1 68414.m08315 no apical meristem (NAM) family protein
similar to NAM GB:CAA63101 from [Petunia x hybrida]
Length = 324
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 349 QAIFSTNHQHTNDLTTSLHNYG 414
Q + S NH + N+ ++S+H YG
Sbjct: 207 QMLMSNNHYNPNNTSSSMHQYG 228
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 111 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 218
C++YV N+ + ++ +F +G + +V V+RNP
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNP 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,143,353
Number of Sequences: 28952
Number of extensions: 334782
Number of successful extensions: 1134
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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