Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30406
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694...    31   0.69 
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   2.8  
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909...    29   3.7  
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106...    29   4.8  
03_04_0060 + 16932250-16932426,16932990-16933010                       29   4.8  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    29   4.8  
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254...    28   6.4  

>02_04_0544 -
           23768808-23768910,23769005-23769030,23769379-23769497,
           23769542-23769668,23769842-23769905,23769981-23770095,
           23770867-23771101,23771196-23771382,23771948-23772305,
           23772432-23772465
          Length = 455

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 249 PTTPTAVKPPRVGPKTSLNHSIGSSDG-RCVQRAGT*STRAYDSRLLGIPR 100
           P  PT   PP   PKT+ + +  SSDG R +    + S   YD R L + R
Sbjct: 24  PPYPTGSAPPVRLPKTACSATYFSSDGSRLLATVASASATVYDCRTLSVVR 74


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 105  PRLWGIIANPNPQHEGVSAGCPGL*ARENLVPL 7
            P LW +++ P P+++ +  G PG   R  L+ L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLLKL 1142


>11_08_0079 +
           28189782-28189907,28190445-28190553,28190876-28190958,
           28191500-28191562,28191658-28192854,28193247-28193310,
           28193338-28193426,28194404-28194463,28195442-28195547,
           28196057-28196069,28196940-28197111
          Length = 693

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 39  PGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSSD 212
           PG  L + R G+ GL  + I +E  +S +HK   + SL   H     Y + +L   +D
Sbjct: 284 PGQRLIIARGGEGGLGNACILKEMWLSKAHKEEEMASLSTGHPGTETYLILELKSIAD 341


>10_01_0085 +
           1061962-1062141,1062283-1062431,1062734-1062819,
           1062986-1063113,1063213-1063341,1063428-1063495,
           1063575-1063812
          Length = 325

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 30  PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFVHTARRYYRLNDLVRSS 209
           P   G PL+LL  GDWG +    N+  +     K+A  T + FV +    +  N L    
Sbjct: 31  PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLENGLAGVD 89

Query: 210 D 212
           D
Sbjct: 90  D 90


>03_04_0060 + 16932250-16932426,16932990-16933010
          Length = 65

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 235 RRRCWEVTKLDHL-EEVKVVTRFP*GTCGRIINVCCIVC 348
           RRRCW++     L +E++ ++    GT   ++N  C +C
Sbjct: 12  RRRCWQLATTTELKKELRRISVEVYGTKASVLNTDCAIC 50


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 38  PGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLP--IE*FSEV 205
           PG+P +TP  W +  + +P +  +P+KR     VD      T R ++    I+ F EV
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEV 500


>09_06_0111 -
           20924838-20924969,20925147-20925290,20925391-20925453,
           20925993-20926116,20926779-20927005,20927088-20927255,
           20927348-20927498,20927567-20927889
          Length = 443

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 279 FL*MIKFGHFPTTPTAVKPPRVGPKTSLNHSIGSS 175
           FL  + F   PTT  A     VG KT +NH +G +
Sbjct: 198 FLRGVNFIQIPTTLMAQVDSSVGGKTGINHPLGKN 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,573
Number of Sequences: 37544
Number of extensions: 308284
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)