Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30406
         (715 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    30   7.2  
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    30   7.2  
M69008-1|AAA52754.1|  623|Homo sapiens alpha-1 type XIII collage...    30   9.5  
AL138925-3|CAI15452.1|  683|Homo sapiens collagen type XIII alph...    30   9.5  
AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alph...    30   9.5  
AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alph...    30   9.5  
AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen prot...    30   9.5  

>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 351 YVNILFIYLYIYTH--AYIRSFLIFIVYPISHALARVC 458
           Y++I++ Y+YI+ H  AY+  F+   ++   ++ ARVC
Sbjct: 59  YIHIIYTYMYIHMHAYAYMCVFICTHMHTYVYSYARVC 96


>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 329 TCVVLCVICKYFIYLFIYIYACIHSIVLNF 418
           T V +CV     I+++I+IY CIH  V ++
Sbjct: 170 THVYICVFIYICIHVYIHIYICIHICVYSY 199


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 30.3 bits (65), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 329 TCVVLCVICKYFIYL--FIYIYACIHSIVLNF 418
           TC+  C+    ++Y+  +I+IY CIH  V ++
Sbjct: 192 TCIHRCIFIYTYVYICVYIHIYICIHVCVYSY 223


>M69008-1|AAA52754.1|  623|Homo sapiens alpha-1 type XIII collagen
           protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 103 SFMGDNCKPQSPARRSFSGLPGPLG-QGEP 17
           S +G    P  P  R F G PGP+G  G+P
Sbjct: 61  SIIGPRGPPGQPGTRGFPGFPGPIGLDGKP 90


>AL138925-3|CAI15452.1|  683|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 683

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 103 SFMGDNCKPQSPARRSFSGLPGPLG-QGEP 17
           S +G    P  P  R F G PGP+G  G+P
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIGLDGKP 183


>AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 695

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 103 SFMGDNCKPQSPARRSFSGLPGPLG-QGEP 17
           S +G    P  P  R F G PGP+G  G+P
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIGLDGKP 183


>AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 717

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 103 SFMGDNCKPQSPARRSFSGLPGPLG-QGEP 17
           S +G    P  P  R F G PGP+G  G+P
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIGLDGKP 183


>AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen
           protein.
          Length = 717

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 103 SFMGDNCKPQSPARRSFSGLPGPLG-QGEP 17
           S +G    P  P  R F G PGP+G  G+P
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIGLDGKP 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,117,471
Number of Sequences: 237096
Number of extensions: 1739170
Number of successful extensions: 4628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4594
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)