Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30406
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   5.8  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 293 QGFRREPAEGSLTCVVLCVICKYFIYLFIYIYACIHS 403
           + +RRE AE  L+ V L     +F+  F+ +YA + S
Sbjct: 370 ESYRREEAENVLSTVTLIAAMVFFLSFFLAMYAHVKS 406


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 91  DNCKPQSPARRSFSGLPGPLGQ-GEP 17
           ++C+  +PAR+   G PGP GQ G+P
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQP 215


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 438 HALARVCRDDIESDC*HYISNXXXXXXXXQHTHKTIRALQNTITDTEITVLF 593
           H L ++CR+D+ SD      +        + + KT+ A+  T+ DT+ +++F
Sbjct: 117 HILPKLCREDL-SDIQLEYRSFQVFPGEEESSWKTVSAVAKTLKDTKTSLIF 167


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 587 HCNFGVSNGIL*CAYSFMRVLPCACSSSSIRYIMS 483
           +CNF  SN    C +SF+ V+ CA    SI+Y  S
Sbjct: 172 NCNFVPSNHQNQCQFSFVLVISCA--DQSIQYTQS 204


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 587 HCNFGVSNGIL*CAYSFMRVLPCACSSSSIRYIMS 483
           +CNF  SN    C +SF+ V+ CA    SI+Y  S
Sbjct: 136 NCNFVPSNHQNQCQFSFVLVISCA--DQSIQYTQS 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,368
Number of Sequences: 27780
Number of extensions: 264731
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)