Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30406
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    28   5.3  
At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim...    27   9.3  
At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative sim...    27   9.3  

>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
            protein contains proline-rich extensin domains,
            INTERPRO:IPR002965
          Length = 1696

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 357  LHITHNTTHVNDPSAGSLRKPCYDFYFL*MIKFGHFPTTPTAVKPPRVGPKTSLNHSIGS 178
            + + H T  V D S GS      D     ++K G   T     KPP     + L+++I +
Sbjct: 1487 IQLNHFT--VEDKSTGSSNMVDVDNASS-LVKTGEIATLERQSKPPSDSSTSKLSNAIAT 1543

Query: 177  SDGRC 163
            S G+C
Sbjct: 1544 SSGKC 1548


>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 442

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 267 IKFGHFPTTPTAVKPPRVGPKTSLNHSIGSS 175
           + F   PTT  A     VG KT +NH +G +
Sbjct: 201 VNFIQIPTTVMAQVDSSVGGKTGINHRLGKN 231


>At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 338

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 267 IKFGHFPTTPTAVKPPRVGPKTSLNHSIGSS 175
           + F   PTT  A     VG KT +NH +G +
Sbjct: 97  VNFIQIPTTVMAQVDSSVGGKTGINHRLGKN 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,352
Number of Sequences: 28952
Number of extensions: 239423
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)