Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30405
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.73 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.3  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    28   1.7  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    27   2.2  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   3.9  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    26   5.1  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.8  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   6.8  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    26   6.8  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.8  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   9.0  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 93  QLTVTNKRKPDTQEEIPAKIPKTDVN 170
           Q+ V+NK +P  Q++   KIP TD+N
Sbjct: 721 QIPVSNKVQPRDQKQPDFKIPNTDIN 746


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 256 FGSSAAFSTVASLAVVSTINSSEFVLQSSLT 164
           + SS AFST +SL V+  +NSS     +S T
Sbjct: 476 YTSSEAFSTSSSLVVIPPVNSSLVTSSTSFT 506


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1024

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +3

Query: 69   YPVLHSFTQLTVTNKRKPDTQEEIPAKIPKTDVNDDCKTNSEELIVETTAKDATVEKAAE 248
            +  + S   LT+TN R  D +  +   +    V        EEL V    ++A +E +++
Sbjct: 907  WSAISSIHVLTITNDRDMDLEHSLKVLLDNVTVEKSPFAQLEELEVVRKKREAEIEASSK 966

Query: 249  EPKKWKLKN 275
              K+    N
Sbjct: 967  TVKRLASNN 975


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 192 EELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMTRQKQREQM 323
           ++ I E   K    EKA E  +K  + NLL + +  +Q+Q EQM
Sbjct: 396 KKYIDENGPKMLEEEKAREAEQKTSIFNLLFHPEEVQQQQLEQM 439


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -2

Query: 325 IICSLCFCRVICWYCNRFFNFHFFG--SSAAFSTVASLAVVSTINSSEFVLQSSLTSVLG 152
           I  S+     +C+Y  ++  +  F   S    + + S  ++ T   S ++  + LTS L 
Sbjct: 319 ITLSIALLVTLCFYDVKYARYPVFALKSLKDRTILGSCVLIFTYFMSYYIFSNFLTSFLQ 378

Query: 151 ILAGISS*VSGLRLLVTV 98
           +  G+S  +S L L V V
Sbjct: 379 VSYGLSIDMSSLTLNVFV 396


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 283 CNRFFNFHFFGSSAAFSTVASLAVVSTINSSEFV 182
           C  FF ++F+G S AFS   +   +  +    F+
Sbjct: 89  CVSFFQWYFWGYSLAFSQTGTSGYIGNLRHFAFI 122


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 292 CWYCNRFFNFHFFGSSAAFSTVASLAVVSTINS-SEFVLQSSLTSVL 155
           C Y   +F+   FG+S   S + S AV    N  S F+  SS   VL
Sbjct: 698 CGYVVYYFSSLHFGASQISSAIGSFAVGCLGNMYSHFIKSSSFAVVL 744


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 168 NDDCKTNSEELIVETTAKDATVEKAAEEPKKWKLKNLLQY 287
           ND   +++    ++  +  AT++ +  + +K  ++NLLQY
Sbjct: 56  NDSSNSSTYRWNIDLLSSTATIDDSVAKRRKLAVQNLLQY 95


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 233 GKSGGRAKKMEVEESVA--VPANDSTKTKGTN 322
           GKSG R +K+E+E  +   VP++D     G N
Sbjct: 288 GKSGNRKRKLELEFGLKGYVPSDDLLYADGAN 319


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 102 VTNKRKPDTQEEI-PAKIPKTDVNDDCKTNSEELIVE--TTAKDATVEKAA 245
           +  KRK ++ EE+ PAK  +TD + + +  +E L  E    A+ A + +AA
Sbjct: 436 ILRKRKNESPEEVEPAKHQRTDTSTENQETAEVLDPEEIAAAELANITEAA 486


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 260 FFWLFRRFFHSSILGSSFYY*LFRICFTIVINISLG--YFGRYFFLSV 123
           F+ LF     S  + S  YY L  +    + +ISLG  Y G + F+ V
Sbjct: 156 FYSLFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRIYCGMHGFMDV 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,780
Number of Sequences: 5004
Number of extensions: 37773
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)