Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30405
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131...    32   0.44 
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218...    29   3.1  
11_04_0019 + 12311674-12311886,12312746-12312878,12312918-123131...    29   4.1  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    29   5.4  

>03_06_0014 -
           31012116-31012229,31012773-31012985,31013058-31013171,
           31013909-31014040,31014624-31014692,31014763-31015017,
           31015347-31015520,31016104-31016280,31016999-31017107,
           31017343-31017506,31018221-31018517
          Length = 605

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 102 VTNKRKPDTQEEIPA-KIPKTDVNDDCKTNSEELIVETTAKD 224
           VTN +K +  + +P+  +PK  VN+  K+ SEE   ET  +D
Sbjct: 492 VTNAKKANVGKAVPSPSVPKHQVNEYSKSESEESEYETDVED 533


>03_05_0415 -
           24019330-24019539,24020948-24021099,24021765-24021846,
           24021930-24022068,24022775-24023127
          Length = 311

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +1

Query: 457 RGSHSRCKVSRAPYRESCTEAASVPEKTTPATITEI 564
           RG H RC    A YRE+   AAS    TT    TEI
Sbjct: 39  RGGHLRCS---AGYREAAAAAASTSSTTTTPRPTEI 71


>11_04_0019 +
           12311674-12311886,12312746-12312878,12312918-12313125,
           12313342-12313558,12313564-12313848
          Length = 351

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 135 EIPAKIPKTDVNDDCKTNSEELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMTRQKQR 314
           EI A+ P    ND     ++EL++E T K     K  E+P + KL +  + +++ R+K +
Sbjct: 282 EIHAEFPGAGNND-----AQELLLEDTGKTTHTGKKLEQPAQKKLPSAPKPKKVCREKPK 336


>12_02_0318 -
           17457182-17462232,17462745-17462955,17463356-17463403,
           17466161-17466346
          Length = 1831

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 318 VPFVFVESFAGTATDSSTSIFLALPPLF 235
           VP+ FV +F      SS +   ALPP+F
Sbjct: 391 VPYAFVSAFEALLKSSSNAPSFALPPIF 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,983
Number of Sequences: 37544
Number of extensions: 237068
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)