Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30405
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) 36 0.027
SB_20431| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 30 1.8
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 29 3.1
SB_56213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08) 28 7.2
SB_45814| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.6
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
Length = 461
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 81 HSFTQLTVTNKRKPDTQEEIPAKIPKTDVNDDCKTNSEELIVETTAKDATVEKAAEEPKK 260
H T NK+K D +E+ K K +N+D K+ S+ IV+ ++K + K
Sbjct: 295 HKLTPAKPVNKKKNDKKEQTQQKEKKNKINNDVKSKSKSKIVKILKSSKKLKKDGRKAKN 354
Query: 261 WK 266
K
Sbjct: 355 LK 356
>SB_20431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 207 ETTAKDATVEKAAEEPKKWKLKNLLQYQQMTRQKQREQMIA 329
E+T++DA +KA E PK++ L ++Q++ R+ + Q +A
Sbjct: 56 ESTSRDAGAKKAGESPKQFTL-GFEEFQKLKRKVRARQRVA 95
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 120 PDTQEEIPAKIPK-TDVNDDCKTNSEELIVETTAKDATVEKAAE--EPKKWKLKNL 278
P+ E++P+ + + TD+ D E + T KDAT + + E W ++L
Sbjct: 429 PEVDEDLPSDVSRITDIEFDISEAKESKVSSVTGKDATARRESRVIEQPVWSSQSL 484
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 180 KTNSEELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMTRQKQREQ 320
K +E+ E K E+AA+ KWK + LL+ QQ+ R+K+ ++
Sbjct: 259 KEEAEKKREEEERKRREEEEAAQ---KWKKEELLRQQQLEREKEEQE 302
>SB_56213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -2
Query: 271 FNFHFFGSSAAFSTVASLAVVSTINSSEFVLQSSLTSVLGILAGISS*VSGLRLLVTVS* 92
+N + + STV +++ VSTI++ V S S + ++ + + +S + + T+S
Sbjct: 56 YNISTISTISTISTVYNISTVSTISTISTVYNISTVSTISTISTVYN-ISTISTVYTIST 114
Query: 91 VKLCST 74
+ ST
Sbjct: 115 ISTVST 120
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = -2
Query: 244 AAFSTVASLAVVSTINSSEFVLQSSLTSVLGILAGISS*VSGLRLLVTVS*VKLCST 74
+ STV++++ +ST+++ + S S + ++ IS+ V + + TVS V ST
Sbjct: 131 STISTVSTISTISTVSTISTIFTVSTISTVSTISTIST-VYNISTISTVSTVSTIST 186
>SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)
Length = 442
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 171 DDCKTNSEELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMT 299
DD +EL+VE +AK+ E +E W+++ +++++T
Sbjct: 146 DDIVDVEDELVVELSAKNTEEELIQDEKTSWEIEQ-FEFEKLT 187
>SB_45814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 24.6 bits (51), Expect(2) = 7.6
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -2
Query: 307 FCRVICWYC 281
+CR+ CWYC
Sbjct: 40 YCRLNCWYC 48
Score = 22.2 bits (45), Expect(2) = 7.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2
Query: 301 RVICWYCNRFFN 266
R+ CWYC R N
Sbjct: 72 RLNCWYCYRRLN 83
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 123 DTQEEIPAKIP-KTDVNDDCKTNSEELIVETTAKDATVEKAAEE 251
+TQE I P TD+ + +T + E V+T KD+ VEK+ ++
Sbjct: 178 NTQETITRTDPANTDLTETNETRAFEEDVQTETKDSFVEKSDDQ 221
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 123 DTQEEIPAKIPKTDVNDDCKTNSEELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMTR 302
D QE K+ ++ +T+ ++ I+E + A + K+ +E L Q+ T+
Sbjct: 3148 DQQEAEKKKVTSMEIQTTIETHRKQTIIEMVSCAACLRKSYQESAFLDLLITSSLQKQTK 3207
Query: 303 Q-KQREQMI 326
Q K+++Q +
Sbjct: 3208 QIKEKQQAV 3216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,169,410
Number of Sequences: 59808
Number of extensions: 288728
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -