Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30405
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.5  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 61  RQPTLYYTASLSSPLLTNASPTLRKKYLP 147
           R+ TL+YT +L  P +  +  T+   YLP
Sbjct: 237 RRKTLFYTVNLIIPCMGISFLTVLVFYLP 265


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 61  RQPTLYYTASLSSPLLTNASPTLRKKYLP 147
           R+ TL+YT ++  P +  +  T+   YLP
Sbjct: 241 RRKTLFYTVNIIIPCMGISFLTVLTFYLP 269


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 61  RQPTLYYTASLSSPLLTNASPTLRKKYLP 147
           R+ TL+YT ++  P +  +  T+   YLP
Sbjct: 241 RRKTLFYTVNIIIPCMGISFLTVLTFYLP 269


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 61  RQPTLYYTASLSSPLLTNASPTLRKKYLP 147
           R+ TL+YT +L  P ++ +  ++   YLP
Sbjct: 232 RRKTLFYTVNLIVPCVSISYLSVLAFYLP 260


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 61  RQPTLYYTASLSSPLLTNASPTLRKKYLP 147
           R+ TL+YT +L  P +     T+   YLP
Sbjct: 246 RRKTLFYTVNLIIPCVGITFLTVLVFYLP 274


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 52  REQRQPTLYYTASLSSPLLTNAS 120
           R+   PT Y T   S+   TNAS
Sbjct: 914 RQSMMPTRYSTTKSSAVTATNAS 936


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 263 EVEESVAVPANDSTKTKGTND 325
           E+E+  +VPAND   T+  N+
Sbjct: 398 EMEKRQSVPANDLLTTEKDNN 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,031
Number of Sequences: 438
Number of extensions: 2520
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)