Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30405
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    33   0.21 
At3g58840.1 68416.m06558 expressed protein                             32   0.36 
At1g19870.1 68414.m02492 calmodulin-binding family protein conta...    31   1.1  
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    29   4.5  
At1g69280.1 68414.m07943 expressed protein                             29   4.5  
At3g57910.1 68416.m06455 D111/G-patch domain-containing protein ...    28   7.8  

>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +3

Query: 108 NKRKPDTQEEIPAK---IPKTDVNDDCKTNSEELIVETTAKDATVEKAAEEPKKWKLKNL 278
           N  KPD  ++  +K   +    + +  K   E  +V   A D+  + ++E+    K + L
Sbjct: 572 NLSKPDKSKQKASKASVLSDQSLPNSSKKEDEFEVVPAPATDSDSDSSSEDDVHTKAEIL 631

Query: 279 LQYQQMTRQKQREQMI 326
              ++M R+KQREQM+
Sbjct: 632 ACAKKMLRKKQREQML 647


>At3g58840.1 68416.m06558 expressed protein
          Length = 318

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 162 DVNDDCKTNSEELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMTRQKQREQ 320
           +++D+ K   EEL       +  + K  EE KKWK K  L  + ++  ++RE+
Sbjct: 188 EIDDEKKREIEELQKTVIVLNLELVKNVEELKKWKSKKKLTEEALSETQKREK 240


>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
           Pfam profile: PF00612 IQ calmodulin-binding motif
          Length = 794

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = +3

Query: 84  SFTQLTVTNKRKPDTQEEIPAKIPKTDVNDDCKTNSEELIVETTAKDATVEKAAEEPKKW 263
           S T    T ++K D +   P    K   +D  KT+  ELI E   KDAT     E+PK+ 
Sbjct: 532 SVTSSLDTLEKKSDAEGAEPRVEAKLLEDDTFKTDQAELI-EIDVKDATSMGTVEDPKE- 589

Query: 264 KLKN 275
           K++N
Sbjct: 590 KVEN 593


>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = +3

Query: 129 QEEIPAKIPKTDVNDDCKTNSEELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMTRQK 308
           ++E+   I + + N +   N +  +++    D   E   E+ KK     LLQY ++ RQ+
Sbjct: 564 RKEMKQLISQIEANSEF-VNKKRALIKFLPNDLAAESFLEDEKKAGKTPLLQYAEIIRQR 622

Query: 309 QREQ 320
            +++
Sbjct: 623 AQQR 626


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 174 DCKTNSEELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMTRQKQR 314
           DC  NS+E    T +    + K  ++ KK   K + Q QQ  +QK+R
Sbjct: 254 DCN-NSDETPSSTQSFSYPITKKKKKKKKATKKKMTQQQQQQKQKKR 299


>At3g57910.1 68416.m06455 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 265

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 192 EELIVETTAKDATVEKAAEEPKKWKLKNLLQYQQMTRQKQREQM 323
           +EL   +  K++  +    EP + KLKNL  +++   +K+R+Q+
Sbjct: 33  QELSQTSKRKESEKKTVIVEPSRKKLKNLNWHERRRLEKERKQI 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,452
Number of Sequences: 28952
Number of extensions: 198258
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)