Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30404
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.6
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 27 2.1
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 24 2.3
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 3.6
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 3.6
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 4.8
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 26 4.8
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 26 6.3
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.3
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 8.3
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 8.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +3
Query: 288 TDLNMSCENFKKYFMNYNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEEFRTLNWLLE 467
TD+ EN KY Y+ ID + ++ +NS F Y+I K E F +
Sbjct: 1194 TDMLTKLENTVKYLCEYDSIDKVRNSFFKNLNS---FYEMYSIAKAENEERFEK----EK 1246
Query: 468 NKLLFEIKHKAIN*RMK 518
+++ E + K I R K
Sbjct: 1247 RRIMSEDRDKLIRGRQK 1263
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 4 NYPSFALEFRKYLDDNSPYPKPYEFISSSVKSDENNMAIKHLMSDLKL 147
+Y FAL + YL + P+ Y + D N A + L LKL
Sbjct: 250 HYLKFALPYLSYLWTSGPFRDTYTRFGYDPRKDSNAAAYQALFFKLKL 297
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 23.8 bits (49), Expect(2) = 2.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 130 MSDLKLAEPTFMFNPVDVEN 189
M D+ + EP F N DVEN
Sbjct: 317 MDDIDVKEPLFSDNDEDVEN 336
Score = 21.8 bits (44), Expect(2) = 2.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 70 YEFISSSVKSDENNMAIKHLMSDLKLAE 153
++ + SV N+ A KH + D LAE
Sbjct: 263 FDMVDQSVFRAVNDYATKHGLMDSSLAE 290
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 25 EFRKYLDDNSPYPKPYEFISSSVKSDEN 108
+ K+ DD +PYP PY+ ++S S N
Sbjct: 387 DLSKHQDDIAPYPNPYQNYTTSNTSVVN 414
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 25 EFRKYLDDNSPYPKPYEFISSSVKSDEN 108
+ K+ DD +PYP PY+ ++S S N
Sbjct: 387 DLSKHQDDIAPYPNPYQNYTTSNTSVVN 414
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 683 WTASGTISIPWKCPTSAFGNI 621
++ASG + +P KCP + + N+
Sbjct: 372 FSASGPMYVPQKCPATVYNNL 392
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 46 DNSPYPKPYEFISSSVKSDENN 111
+N PYPKP +++ ++ENN
Sbjct: 222 ENEPYPKPQSVPTTTSPNNENN 243
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 6.3
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +1
Query: 34 KYLDDNSPYPKPYEF 78
KY+++ P P+PYE+
Sbjct: 450 KYMEEEKPVPEPYEY 464
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 173 LWMLKICSIKFELTANKLVGSKIPMK 250
+W CS K E TAN GS P K
Sbjct: 286 IWYEGDCSFKAETTANIKFGSHFPSK 311
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 378 INSLKNFGNRYAIYKPSLLEEFRTLN 455
IN + FG R ++KP+L ++FR++N
Sbjct: 154 INKTRAFGMR--LWKPALYKKFRSIN 177
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 336 YNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEEFRTLN 455
+ +++ +++++K NSL N ++ + L E RT+N
Sbjct: 5 FAIVNKGGIVLWKKTNSLVNLKCLQVLFHEAFLSEQRTVN 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,628
Number of Sequences: 5004
Number of extensions: 59822
Number of successful extensions: 210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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