Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30404
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    30   2.2  
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931...    29   5.0  
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148...    29   5.0  
02_01_0370 + 2659704-2660012,2660318-2660488,2660981-2661058,266...    28   8.7  

>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 167  SILWMLKICSIKFELTANKLVGSKIPMKLLQS 262
            ++LW   +C+IK++   +KLV  K  +K++ S
Sbjct: 1519 ALLWRYALCTIKYQQLKSKLVEKKWKLKIIYS 1550


>10_06_0154 -
           11291630-11292106,11292192-11292457,11293027-11293131,
           11293210-11293234,11293349-11293465,11293528-11294041,
           11295524-11295578,11295980-11296060,11296129-11296219,
           11296321-11296417,11297465-11297529,11297950-11298108,
           11298208-11298455,11300667-11300835
          Length = 822

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 2   LTIHHSPWNSGSIWMTILHTQNLMNSSQAVSKVMKTIW 115
           L +HH+   S S ++  +  QN++ +SQAVS   K+I+
Sbjct: 165 LGVHHNFLGSYSQYLAEIQRQNMVMNSQAVSSDKKSIF 202


>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
            35714942-35715135,35715237-35716786,35716946-35717049,
            35717258-35717399,35717692-35717910
          Length = 1535

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 333  NYNLIDMLNVIVYEKINSLKNFGNRYA---IYKPSLLEEFRTLNWLLENKLLFEIKHKAI 503
            N+NL D  N ++++ +NS +N+GN  +   I + +++E        ++  LL E+    +
Sbjct: 883  NFNLDDK-NTMMFQSVNSTENYGNNRSVEFIPETNMIETLEVAGESIDG-LLHEVSSNVV 940

Query: 504  N 506
            N
Sbjct: 941  N 941


>02_01_0370 +
           2659704-2660012,2660318-2660488,2660981-2661058,
           2661658-2661803,2662001-2662112,2662280-2662405,
           2662618-2662731
          Length = 351

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 10  PSFALEFRKYLDDNSPYPKPYEFISSSVKS 99
           PS +L  R+   D + +PKP+   SSSVKS
Sbjct: 23  PSRSLSRRRAPPDAAAFPKPWVIPSSSVKS 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,979,287
Number of Sequences: 37544
Number of extensions: 307527
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)