Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30404
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       33   0.24 
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)                30   2.2  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           28   6.7  

>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = +3

Query: 324 YFMNYNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEEFRTLNWLLENKLL 479
           Y  N N +  L+ +V ++ N LKNF +R A  +P++L   +T++ L +  LL
Sbjct: 618 YQRNENRLASLDPLVLQERNFLKNFVSRVAALRPNVLLVEKTVSRLAQEMLL 669


>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
          Length = 1031

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 503 KLEDEDEIECFILAKRRKLHIDSLENL 583
           K ED+DE+E F+  K +KLH    E L
Sbjct: 154 KKEDDDEVEGFLFGKLKKLHPHLTEQL 180


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 34  KYLDDNSPYPKPYEFISSSVKSDENNMAIKHLMSDLKLAEPTFMFNP-VDVENMQYQI 204
           KY+   S YP PY+   S  K +  N  +  L ++L        FN  + +E MQ ++
Sbjct: 309 KYVVGLSQYPIPYDLRVSLNKGEPTNALLDLLSAELTATNHEAKFNALLHMEEMQMEV 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,179,385
Number of Sequences: 59808
Number of extensions: 383296
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)