Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30404
         (726 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001299-1|AAN71054.1|  905|Drosophila melanogaster AT12234p pro...    31   1.6  
AE014297-4542|AAN14217.1|  905|Drosophila melanogaster CG31029-P...    31   1.6  
AY779921-12|AAV59231.1|  179|Drosophila melanogaster basic helix...    29   8.5  

>BT001299-1|AAN71054.1|  905|Drosophila melanogaster AT12234p
           protein.
          Length = 905

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 160 FMFNPVDVENMQYQIRTYCKQIGWLENSDEIV 255
           F  + ++ + +QY++   C+Q GW  NSD  V
Sbjct: 742 FCRSHIEKKRIQYEVENECRQRGWPNNSDTFV 773


>AE014297-4542|AAN14217.1|  905|Drosophila melanogaster CG31029-PA
           protein.
          Length = 905

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 160 FMFNPVDVENMQYQIRTYCKQIGWLENSDEIV 255
           F  + ++ + +QY++   C+Q GW  NSD  V
Sbjct: 742 FCRSHIEKKRIQYEVENECRQRGWPNNSDTFV 773


>AY779921-12|AAV59231.1|  179|Drosophila melanogaster basic
           helix-loop-helix transcriptionfactor protein.
          Length = 179

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = -3

Query: 310 SHDIFKSVSS-LGRTVITLQQFHR-----NFRANQFVCSKFE 203
           S D+ KSV + LGR    LQQFH      NF  N  VCS  +
Sbjct: 105 SVDLGKSVMTHLGRVYKNLQQFHEAQSATNFIQNSMVCSSMD 146


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,662,077
Number of Sequences: 53049
Number of extensions: 564555
Number of successful extensions: 1456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)