Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30404
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    30   1.8  
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    30   1.8  
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    29   3.1  
At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing pr...    29   4.1  
At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing pr...    29   4.1  
At4g13470.1 68417.m02103 hypothetical protein                          29   4.1  
At1g08080.1 68414.m00884 carbonic anhydrase family protein simil...    28   7.2  

>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +3

Query: 336 YNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEEFRTLNWLLENKLLFEIKHKA 500
           +NL+  LNV    K  S+K       IY  SL+     L+ L+ NKLL +   KA
Sbjct: 242 FNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLINNKLLNKEHEKA 296


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 261 VITVLPNELTDLNMSCENFKKYFMNYNLIDMLNVIVYEKINSLKNF 398
           VI V+  E T L M  EN+  + + YN +  L V+ +    S +NF
Sbjct: 358 VIKVMEEEFTKLEMLEENYSDFDLTYNYLHWLTVLPWGNF-SYENF 402


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 336 YNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEEFRTLNWLLENKLLFEIKHKA 500
           +NL+  LNV    K  ++K       IY  SL+     L+ L+ NKLL +   KA
Sbjct: 242 FNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIALHSLINNKLLNKEHEKA 296


>At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing
           protein similar to methyl-CpG binding protein MBD4 [Mus
           musculus] GI:3800807; contains Pfam profile PF01429:
           Methyl-CpG binding domain
          Length = 272

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 22  LEFRKYLDDNSPYPKPYEFISSSVKSDENNMAI-KHLMSDLKLAEPTFMFNPVDVENMQY 198
           +E +KYL+DNS      E+I   VK  + +  I K L  D     P  + + +D  N   
Sbjct: 163 VEVQKYLNDNS------EYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSID--NTNT 214

Query: 199 QIRTYCKQIGWLENSDEI 252
            +      + W+   D I
Sbjct: 215 PVAKEANPLAWISPDDHI 232


>At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing
           protein similar to methyl-CpG binding protein MBD4 [Mus
           musculus] GI:3800807; contains Pfam profile PF01429:
           Methyl-CpG binding domain
          Length = 272

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 22  LEFRKYLDDNSPYPKPYEFISSSVKSDENNMAI-KHLMSDLKLAEPTFMFNPVDVENMQY 198
           +E +KYL+DNS      E+I   VK  + +  I K L  D     P  + + +D  N   
Sbjct: 163 VEVQKYLNDNS------EYIGEGVKLSQFSFQIPKPLQDDYVRKRPARLLDSID--NTNT 214

Query: 199 QIRTYCKQIGWLENSDEI 252
            +      + W+   D I
Sbjct: 215 PVAKEANPLAWISPDDHI 232


>At4g13470.1 68417.m02103 hypothetical protein
          Length = 256

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 668 TISIP-WKCPTSAFGNIFFNHSTVFVIP-ARDFQENQY 561
           T  IP WKC   +F + FF+  T + IP  RD   ++Y
Sbjct: 129 TCDIPLWKCCNGSFKHKFFSRDTWYEIPLTRDMLGSRY 166


>At1g08080.1 68414.m00884 carbonic anhydrase family protein similar
           to storage protein (dioscorin) [Dioscorea cayenensis]
           GI:433463; contains Pfam profile PF00194:
           Eukaryotic-type carbonic anhydrase
          Length = 275

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 137 SDIKCFMAILFSSLLTLLEMNS*GFGYGELSSKYFLNSKAND 12
           S I C   +   S+ T++ ++S    +GE+  +   N K ND
Sbjct: 5   SSISCIFFVALFSIFTIVSISSAASSHGEVEDEREFNYKKND 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,619,042
Number of Sequences: 28952
Number of extensions: 281142
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)