Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30402
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   3.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   5.8  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.6  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 8   VKHNKQKANALFFTSSVSLKFNL 76
           V++N+Q    + F   VSL FNL
Sbjct: 127 VRNNRQIRRMVVFLIGVSLSFNL 149


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = +1

Query: 37  VIFHILCFFEI*FEITAVTAYRS*SVCCE*FYIYYRFVCC 156
           V+  +LC +   +     T +    VC   FY  +   CC
Sbjct: 231 VLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCC 270


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 596 PQDDP*DGSAAR*CK 552
           PQD P D S A  CK
Sbjct: 63  PQDSPYDASVAAACK 77


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 336 SGESARRGTGTPTGSASITSYARPP 262
           S  +A R   TPTG  + ++ A PP
Sbjct: 210 SPAAAPRSVATPTGIPTPSTSASPP 234


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 518 PRWRPTRKNARPYINELRSRLKDHLEGVEKTRLTLGTADP 637
           P+    +KN    + ELR   +   + ++K  L L  A P
Sbjct: 213 PKGSEDKKNYVLLLKELREAFEAEAQEIKKPALLLSAAVP 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,339
Number of Sequences: 336
Number of extensions: 2641
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)