Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30402
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 29 0.67
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 27 3.6
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera... 26 6.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 6.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 6.2
SPAC11D3.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.2
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 8.2
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.2
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 8.2
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 29.1 bits (62), Expect = 0.67
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 367 EAEGSRREET*LGS**DGRHCSEDGQDRGGVPHPQRADE*LHRRHQGALDAKMETHEEK 543
EAE R + LG G+HCSE G P P+ LH + D +T K
Sbjct: 320 EAEAKARRDKRLGELLTGKHCSECGTPLYSDPSPEELGIWLHALKYESKDWSYKTQLPK 378
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 712 RFLRNALSASLLVNLYLRMPFVHFPRVCCSKGQPGLLNALKMILET 575
R++ A ++ Y + F H PRV C+ GQP L L I T
Sbjct: 90 RYILTAQGLYKMLEKYKKCDFGHCPRVLCN-GQPMLPVGLSDIAHT 134
>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
formyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 263 GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAE 385
G + + VI A G P+ + T S+E ++EK+ AAE
Sbjct: 151 GAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKIHAAE 191
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 165 DAIQLFRSLCRLKVEAMEVETKSTEIRCQECR 260
DA +FRS+CRL V + K + IR Q R
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAMR 418
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 207 PLLTDRDFETAELRPTITTDKPIINVELFAT-NTLTPIRRYSCYFKLNFKETE 52
P++ D E + K N E F + NT+T + +C+ +NF+E E
Sbjct: 923 PIIDLNDIYIDESNERVVKGKSKDNFEYFLSGNTVTRKKDNACFKMMNFEEIE 975
>SPAC11D3.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 519 QDGDPRGKTRGLTSTSCAPV 578
+DGD T G+T++SC PV
Sbjct: 94 RDGDTEFDTAGVTASSCFPV 113
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +2
Query: 236 RNPLPRVSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERRRS 400
++ + ++ GG A +A P +P P +P P+ E +++ R +S
Sbjct: 873 KSTVNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRPKS 927
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 25.4 bits (53), Expect = 8.2
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = +2
Query: 464 IRSEQTNNFIVATK-ERSTPRWRPTRKNARPYIN----ELRSRLKDHLEGVEKTRLTLGT 628
I+ E+ + + + + E+S +R +P +N E + LE ++++ T
Sbjct: 105 IQREEVADMLESVEHEKSIQEFRKRYNVQKPKVNISHAEAEEDIDSFLESMDQSAPPSIT 164
Query: 629 ADPRKVY--KGHSKIKIDQQACRQSVTEKPSK 718
D + Y HS + I + R ++EKP+K
Sbjct: 165 EDKGENYISSNHSSMHISRNDSRNYMSEKPNK 196
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 332 PEKTPSVEEIQEKLKAAEERRRSLE 406
PE TP+VE++ E L E R SL+
Sbjct: 301 PESTPAVEKVSENL--GSETRESLQ 323
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 317 RRADSPEKTPSVEEIQEKLK 376
RRAD PE+TPS ++ L+
Sbjct: 21 RRADRPEETPSSSVYEQNLR 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,252
Number of Sequences: 5004
Number of extensions: 44343
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -