Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30402
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521...    29   3.7  
11_01_0045 + 346817-347168,347582-347713,347790-347968,348654-34...    29   4.9  
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043...    28   6.5  
10_01_0112 - 1386762-1386953,1387228-1387309,1387399-1387509,138...    28   8.6  

>05_01_0580 +
           5210002-5210170,5210466-5210524,5210883-5211668,
           5211898-5212737
          Length = 617

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 308 PVPRRADSPE-KTPSVEEIQEKLKAAEERRRSLE 406
           P PR ++    KTP + E++E +++ +ER ++LE
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLE 176


>11_01_0045 +
           346817-347168,347582-347713,347790-347968,348654-348789,
           348974-349070,349206-349306,349618-349781,349867-349938,
           350034-350150,350235-350369,350421-350532,351197-351513,
           353065-353265,353467-353544
          Length = 730

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 518 PRWRPTRKNARPYINELRSRLKDHLEGVEK 607
           PRWRPTR   +P + E+ +  +   +G E+
Sbjct: 43  PRWRPTRCRGKPGVTEVVAEKETSPDGEEE 72


>01_05_0627 +
           23802235-23802853,23803357-23803430,23804207-23804364,
           23804640-23804964
          Length = 391

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -3

Query: 557 CKASRFSSWVSILASS----APWWRR*SYSSARCGCGTPPR 447
           C A R S   S   +S    APWWRR   ++A     +PPR
Sbjct: 55  CSAERLSHVKSSTRTSSSRPAPWWRRSRMAAAVAVTSSPPR 95


>10_01_0112 -
           1386762-1386953,1387228-1387309,1387399-1387509,
           1387590-1387841,1387927-1388348,1388430-1390160,
           1390251-1390448
          Length = 995

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 602 EKTRLTLGTADPRKVYKGHSKIKIDQQACRQSVTEKPSKK 721
           ++TR  +G  DP ++ K    +++ +Q C Q V + P +K
Sbjct: 791 DRTRAKVGYVDPTRICKTQHTVEL-RQDCEQLVGKTPEEK 829


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,883
Number of Sequences: 37544
Number of extensions: 321147
Number of successful extensions: 1142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)