Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30402
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.058
SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)                     30   2.2  
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)                   29   3.8  
SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 557 INELRSRLKDHLEGVEKTRLTLGTADPRKVYKGHSKIKIDQQACRQ 694
           INEL +  KD   G+E+ +  L +   RK +  HS ++ +QQ CR+
Sbjct: 826 INELENAKKDIERGIEEEKNILMSEARRKEHALHSSLEYEQQRCRE 871


>SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)
          Length = 589

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 186 SLCRLKVEAMEVETKSTEIRCQECRR 263
           ++CR  +E M  +++S EIRC  CR+
Sbjct: 42  NVCRKCLEGMATDSESKEIRCPVCRK 67


>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
          Length = 1114

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 94   AYRS*SVCCE*FYIYYRFVCCDRRTQFSCFEV 189
            A+   S+ C   Y Y  F CCD  T+ S FE+
Sbjct: 935  AFTPPSLTCHYLYSYRTFQCCDLGTKISPFEM 966


>SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1326

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 98   IGVKVFVANNSTFIIGLSVVIVGRNSAV 181
            +GVK FV    T ++GL  ++VG ++ V
Sbjct: 1156 VGVKTFVVGVETLVVGLDTLVVGVDTDV 1183


>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 517 AKMETHEEKREALHQRAALPSQGSS*GR*EDQV-DPWNSRPA 639
           AK +   E+R    +R AL  +GSS GR  D+  DP +SR A
Sbjct: 449 AKEDLDRERRMLEERRYALEDRGSSSGRYRDEYEDPRSSRRA 490


>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 338 KTPSVEEIQEKLKAAEERRR 397
           K P + E+QEKLKA +E RR
Sbjct: 281 KDPKLLELQEKLKAKKEERR 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,038,874
Number of Sequences: 59808
Number of extensions: 370586
Number of successful extensions: 2841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2841
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)