Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30402
         (721 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    26   1.4  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          24   4.1  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.2  

>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = -3

Query: 488 SYSSARCGC---GTPPRSWPS 435
           SYSS++CGC      P  WPS
Sbjct: 337 SYSSSQCGCPDIPPAPNMWPS 357


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 458 SRIRSEQTNNFIVATKER-STPRWRPTRKNARPYINELRSRLKDHL--EGVEKTRLTLGT 628
           SR RS   +  +  ++ R S  R R ++  +R      RSR +  L   G  + RLT  T
Sbjct: 417 SRSRSRSLSRSVSRSRSRGSRSRSRTSQSRSRSKTRTSRSRSRTPLPARGHVRARLTRRT 476

Query: 629 ADPRKV 646
             P +V
Sbjct: 477 IPPTRV 482


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +2

Query: 341 TPSVEEIQEKLKAAEERR 394
           TP++EE++ + + AE+R+
Sbjct: 298 TPAIEELENECRIAEQRQ 315


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,161
Number of Sequences: 2352
Number of extensions: 11672
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)