Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30402
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021475-3|CAI79247.1|  465|Caenorhabditis elegans Hypothetical ...    35   0.067
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    29   4.4  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    29   4.4  
U39994-1|AAB37019.1|  326|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   7.7  

>AL021475-3|CAI79247.1|  465|Caenorhabditis elegans Hypothetical
           protein F22E12.4c protein.
          Length = 465

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 494 VATKERSTPRWRPTRKNARPYINELRSRLKDHLEGVEKTRLTLGTADPRKVYKGHSK 664
           + T   S  RW+P  K  +P I E     K  +    K      +ADP+  YK H+K
Sbjct: 14  IPTPMPSQSRWKPYSKTMKPSIIETEGGSKPTVSRTRKRPTPSNSADPKINYKDHNK 70


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 340 DSFRRRDPREAEGSRREET*LGS**DGRHCSEDGQDRGGVPHP 468
           D+F+ +  R ++GS      +GS  DG  CS D   +   P P
Sbjct: 351 DTFKNQSRRSSQGSHDSAITMGSEEDGSRCSPDRDKQTPSPAP 393


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 340 DSFRRRDPREAEGSRREET*LGS**DGRHCSEDGQDRGGVPHP 468
           D+F+ +  R ++GS      +GS  DG  CS D   +   P P
Sbjct: 351 DTFKNQSRRSSQGSHDSAITMGSEEDGSRCSPDRDKQTPSPAP 393


>U39994-1|AAB37019.1|  326|Caenorhabditis elegans Hypothetical
           protein C48C5.3 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 141 IINVELFATNTLTPIRRYSCYFKLNFKETEDVKNNAFAFCLLCL 10
           I    +F   TL P R Y+   +L  +ET+++   +  F   CL
Sbjct: 242 IFMTTIFTVGTLLPYRIYNIQRQLTPRETDEISCGSIIFSWTCL 285


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 302 GVPVPRRADSPEKTPSVEEIQEKLKAAEERRRSL 403
           GVP+P+     EK    +E +EK+K+ EE  R L
Sbjct: 179 GVPIPKIDIEIEKASPKKEKKEKVKSPEELTRRL 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,772,843
Number of Sequences: 27780
Number of extensions: 260897
Number of successful extensions: 1008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)