Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30402
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04235.1 68415.m00411 expressed protein weak similarity to ne... 31 0.77
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr... 29 3.1
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr... 29 3.1
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 29 4.1
At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family pr... 29 4.1
At5g01290.1 68418.m00039 mRNA capping enzyme family protein simi... 28 5.4
At4g32490.1 68417.m04625 plastocyanin-like domain-containing pro... 28 5.4
At3g53350.3 68416.m05888 myosin heavy chain-related low similari... 28 7.2
At3g53350.2 68416.m05887 myosin heavy chain-related low similari... 28 7.2
At3g53350.1 68416.m05886 myosin heavy chain-related low similari... 28 7.2
At1g12080.2 68414.m01397 expressed protein 27 9.5
At1g12080.1 68414.m01396 expressed protein 27 9.5
>At2g04235.1 68415.m00411 expressed protein weak similarity to
neurofilament protein (GI:161292) [Loligo pealei]; weak
similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
(Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
cerevisiae]
Length = 1226
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 505 GALDAKMETHEEKREALHQRAALPSQGSS*GR*EDQVDPWNSRPAESVQRAFEDK 669
GAL+ ++T ++ R + ++ LP Q SS G VD + RP S ++ D+
Sbjct: 527 GALNPAVDTSDDNRTPVQEKKGLPDQCSS-GALSPAVDTSDDRPPVSEKKGIPDQ 580
>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 491 IVATKERSTPRWRPTRKNARPYINELRSRLKDHLEGVEKT 610
IV +E P ++ +K ++PY++++ + K H++ V T
Sbjct: 303 IVKFQEHVDPYYQEAKKFSKPYVDQVATATKPHVDKVRAT 342
>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 491 IVATKERSTPRWRPTRKNARPYINELRSRLKDHLEGVEKT 610
IV +E P ++ +K ++PY++++ + K H++ V T
Sbjct: 303 IVKFQEHVDPYYQEAKKFSKPYVDQVATATKPHVDKVRAT 342
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 305 VPVPRRADSPEKTPSVEEIQEKLKAAEERRRSLE 406
V + +SP+ T + +I+E LK A ER SLE
Sbjct: 85 VAAVKGTESPQTTTRLSQIKEDLKKANERISSLE 118
>At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 368
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 604 EDQVDP-WNSRPAESVQRAFEDKD*PTSLPTKRYGETF 714
+D V P W+ P S+Q F+ P+S P YG F
Sbjct: 66 QDSVSPIWSLPPPTSIQPPFDQFPPPSSSPASFYGSFF 103
>At5g01290.1 68418.m00039 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF03919: mRNA capping enzyme
C-terminal domain
Length = 607
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 445 DRGGVPHPQRADE*LHRRHQGALDAKMETHEEKREALHQR 564
D P P+ DE RRH+ +++ +E +RE +R
Sbjct: 2 DLNASPQPEEDDEPFKRRHEDRMESAVEIARREREERKKR 41
>At4g32490.1 68417.m04625 plastocyanin-like domain-containing
protein
Length = 221
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 185 KSLSVKSGSHGS*N*IHRNPLPRVSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQ 364
+ L+V S G + R+P P S L P +PV + SP TP V+
Sbjct: 122 QKLAVTVMSTGHHSHTPRHPSPSPSPSASPVRKALLSPAPIPVHKALSSPAPTPGVDPSH 181
Query: 365 EKLKA 379
++ A
Sbjct: 182 SEVLA 186
>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +3
Query: 171 IQLFRSLCRLKVE-----AMEVETKSTEIRCQECRRA 266
+Q+ RS KVE AME E K +I+C++ R+A
Sbjct: 322 LQILRSAMEKKVETANTEAMEAELKRVKIQCEQWRKA 358
>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +3
Query: 171 IQLFRSLCRLKVE-----AMEVETKSTEIRCQECRRA 266
+Q+ RS KVE AME E K +I+C++ R+A
Sbjct: 322 LQILRSAMEKKVETANTEAMEAELKRVKIQCEQWRKA 358
>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 396
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +3
Query: 171 IQLFRSLCRLKVE-----AMEVETKSTEIRCQECRRA 266
+Q+ RS KVE AME E K +I+C++ R+A
Sbjct: 324 LQILRSAMEKKVETANTEAMEAELKRVKIQCEQWRKA 360
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 278 EVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERR 394
EVI PV ++A+ +TP+V E ++K + EE++
Sbjct: 84 EVITETPVVEEEEKKAEEVTETPAVVEEEKKTEVVEEKQ 122
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 278 EVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERR 394
EVI PV ++A+ +TP+V E ++K + EE++
Sbjct: 50 EVITETPVVEEEEKKAEEVTETPAVVEEEKKTEVVEEKQ 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,200
Number of Sequences: 28952
Number of extensions: 243530
Number of successful extensions: 843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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