Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30401
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   1.8  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   4.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.2  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   9.7  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   9.7  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 544 AASVPMCLSLAIAGNSFCGSDVGGFFKVSP 633
           AA+ P  +S   AG S C S+VG F  + P
Sbjct: 100 AATDPSVVSKFRAGFSECASEVGRFPGLDP 129


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 43  HIKREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPD 168
           H  R+ GYF HE+      +    DGK Y     P    Y D
Sbjct: 106 HCPRKHGYFAHEEPHICDKFYYCVDGK-YNMITCPNGLVYND 146


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 533 HSAVLSPVLPQSIS 492
           HSA+LSP +P +++
Sbjct: 126 HSALLSPAMPHNLT 139


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 390 YGLWNLRATNTG 425
           YG++N+RA  TG
Sbjct: 331 YGVFNIRARRTG 342


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 390 YGLWNLRATNTG 425
           YG++N+RA  TG
Sbjct: 331 YGVFNIRARRTG 342


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,018
Number of Sequences: 336
Number of extensions: 3390
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)