Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30401
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 120 8e-28
07_03_0104 + 13434954-13435145,13436220-13436288,13436386-134365... 53 3e-07
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853... 49 4e-06
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 47 1e-05
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 47 1e-05
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 44 9e-05
02_02_0737 - 13529180-13529543,13530661-13531178 31 0.67
12_02_1082 + 25919767-25919830,25920609-25920799 31 0.89
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 31 0.89
03_05_0024 - 19934529-19935298,19935359-19935871,19936147-199366... 29 2.7
06_03_1297 + 29110432-29110542,29110613-29110804,29110893-291109... 29 3.6
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261... 28 6.2
10_03_0002 - 6858257-6861205 28 6.2
01_06_1365 - 36690267-36692222 28 6.2
10_08_0533 + 18592177-18592581,18592674-18593906 28 8.3
06_01_0120 - 926226-926289,926821-926887,927122-927170,927257-92... 28 8.3
01_05_0175 - 18936752-18937621,18938855-18941641 28 8.3
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 120 bits (290), Expect = 8e-28
Identities = 45/81 (55%), Positives = 64/81 (79%)
Frame = +1
Query: 10 KGRKMVVIVDPHIKREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDFFNPVVS 189
KGRKMV IVDPHIKR+ + LHE+AT GYYVKD GKD++GWCWPG+SSYPD NP +
Sbjct: 427 KGRKMVTIVDPHIKRDSSFHLHEEATAKGYYVKDATGKDFDGWCWPGASSYPDMLNPEIR 486
Query: 190 RYYSDRYRFENFPGTSKDVHL 252
+++D++ +EN+ G++ +++
Sbjct: 487 EWWADKFSYENYKGSTPTLYI 507
Score = 65.7 bits (153), Expect = 3e-11
Identities = 35/68 (51%), Positives = 39/68 (57%)
Frame = +3
Query: 255 NDMNEPSVFNGPEVTMPKDCRHYKPPQDGLEGLAAYWEHRHVHNEYGLWNLRATNTGLLD 434
NDMNEPSVFNGPEVTMP+D HY EHR +HN YG + AT GLL
Sbjct: 509 NDMNEPSVFNGPEVTMPRDAVHYGDV-----------EHRELHNAYGYYFHMATADGLLK 557
Query: 435 RADGSTDP 458
R +G P
Sbjct: 558 RGEGKDRP 565
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 5/42 (11%)
Frame = +1
Query: 511 TGDNTAEWSFLAASVPMCLSLAIAGNSF-----CGSDVGGFF 621
TGDN+A+W L +S+PM L+L + G +F G+D+GGFF
Sbjct: 584 TGDNSADWDHLKSSIPMVLTLGLTGMTFSVGALTGADIGGFF 625
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 452 RPFLLTRAVFAGTQRYSAV 508
RPF+L+RA FAG+QRY A+
Sbjct: 564 RPFVLSRAFFAGSQRYGAI 582
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 630 PEAELMTRWYQAAAFQAVLSG 692
PE +L+ RWYQ AF G
Sbjct: 628 PEPDLLVRWYQVGAFYPFFRG 648
>07_03_0104 +
13434954-13435145,13436220-13436288,13436386-13436523,
13436612-13436729,13437214-13437296,13438305-13438400,
13438552-13438720,13438798-13438940,13439027-13439113,
13439197-13439382,13439956-13440123,13441028-13441148,
13441453-13441522,13441694-13441781,13441866-13442018
Length = 626
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +1
Query: 13 GRKMVVIVDPHIKREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDF 171
G K + ++DP IK+E GYF++E +E +++ DG + G WPG +PDF
Sbjct: 249 GCKAIWMLDPGIKKEEGYFVYETGSENEVWIQKADGSPFIGEVWPGDCVFPDF 301
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 511 TGDNTAEWSFLAASVPMCLSLAIAGNSFCGSDVGGFF-KVSPKL 639
TGDN + W L SVPM L L ++G G D+GGF +PKL
Sbjct: 407 TGDNLSNWEHLHMSVPMVLQLGLSGQPLSGPDIGGFAGNATPKL 450
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 255 NDMNEPSVFNGPEVTMPKDCRHYKPPQDGLEGLAAYWEHRHVHNEYGLWNLRATNTGL 428
NDMNEP+VF TMP H G + + H + HN YG+ R+T G+
Sbjct: 327 NDMNEPAVFKSTTKTMPVSNIH-----RGDDDIGGVQNHSYYHNVYGMLMARSTYEGM 379
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 452 RPFLLTRAVFAGTQRYSA 505
RPF+LTRA F G+QRY+A
Sbjct: 387 RPFVLTRAGFIGSQRYAA 404
>07_03_0108 +
13481249-13481464,13484556-13484693,13485320-13485388,
13485462-13485599,13485685-13485802,13486265-13486347,
13486921-13487013,13487801-13487969,13488056-13488129,
13488448-13488633,13490009-13490101,13490469-13490534,
13490618-13490785,13491199-13491319,13492072-13492141,
13492389-13492476,13492565-13492685,13492964-13493157,
13493239-13493347,13493488-13493643,13493858-13493957,
13494115-13494288,13494549-13494694,13494796-13494860,
13495013-13495018
Length = 986
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 1 LTAKGRKMVVIVDPHIKREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDF 171
L + G K + ++DP IK E GYF+ + E +V+ D + + G WPG +PDF
Sbjct: 298 LHSVGCKAIWMLDPGIKNESGYFVFDSGLESDVWVQKEDKQPFVGEVWPGDCVFPDF 354
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 452 RPFLLTRAVFAGTQRYSAV 508
RPF+LTRA F G QRY+A+
Sbjct: 388 RPFVLTRAGFIGQQRYAAM 406
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +1
Query: 1 LTAKGRKMVVIVDPHIKREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDFFNP 180
L G+K VVI+DP I Y A + ++K +G +Y G WPG+ S+PDF NP
Sbjct: 115 LHRNGQKYVVIIDPGISVNATYGTFIRAIKEDIFLK-WNGSNYLGVVWPGNVSFPDFLNP 173
Query: 181 VVSRYYS 201
+ +++
Sbjct: 174 RAAEFWA 180
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 511 TGDNTAEWSFLAASVPMCLSLAIAGNSFCGSDVGGF 618
TGDN A W L S+ LS + G G+D+ GF
Sbjct: 293 TGDNFATWDDLRYSINTMLSFGLFGIPMIGADICGF 328
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +1
Query: 7 AKGRKMVVIVDPHIKREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDFFNPVV 186
A+G K +V++DP I Y +++ + ++K DGK Y WPG +PDF NP
Sbjct: 367 AQGMKYIVLIDPGIAVNNTYGVYQRGMQGDVFIK-LDGKPYLAQVWPGPVYFPDFLNPNG 425
Query: 187 SRYYSDRYR 213
++ D R
Sbjct: 426 VSWWIDEVR 434
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 511 TGDNTAEWSFLAASVPMCLSLAIAGNSFCGSDVGGFF 621
TGDN W L S+ L+ I G G+D+ GF+
Sbjct: 570 TGDNKGTWENLRYSISTMLNFGIFGMPMVGADICGFY 606
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +1
Query: 1 LTAKGRKMVVIVDPHIKREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDFFNP 180
L G+K VVI+DP I Y + ++K +G +Y G WPG+ +PDF NP
Sbjct: 439 LHRNGQKFVVIIDPGINVNTTYGTFVRGMKQDIFLK-WNGSNYLGVVWPGNVYFPDFLNP 497
Query: 181 VVSRYYS 201
+ +++
Sbjct: 498 RAAEFWA 504
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 511 TGDNTAEWSFLAASVPMCLSLAIAGNSFCGSDVGGF 618
TGDN A W L S+ LS + G G+D+ GF
Sbjct: 617 TGDNAATWEDLHYSINTMLSFGLFGIPMIGADICGF 652
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -3
Query: 574 PVTSTSARKPQGTTTPPYCHLSYRRVSLGACEHGPREQEGSVDPSARSSSPVLVARRFHS 395
P S T++PP + RR+ + + HG + G + ++ + V R H
Sbjct: 118 PSALPSPTASSSTSSPPVDKIISRRIQVASMHHGQAIRRGHIITKQQACNMVNERRGLHH 177
Query: 394 PYSL 383
PY L
Sbjct: 178 PYRL 181
>12_02_1082 + 25919767-25919830,25920609-25920799
Length = 84
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 455 PFLLTRAVFAGTQRYSAVGQVTIRRSGRSL---RLPCRCAC 568
P LLT VFAGT R G R+ +SL + PCR C
Sbjct: 16 PLLLTSGVFAGTVRTEGCGDTFFSRTYKSLFCRKGPCREHC 56
>05_05_0136 -
22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 460 PAHEGRVRRHPEILCGRTGDNTAEWSFLAASVPMCLSLAIAGNSFCGSDVGGFF 621
P G R ++ D E + +AA +C +L SFCG DVGG+F
Sbjct: 100 PRRCGGGGRFQRMVAAVAADGAEEGAVVAALTELCEAL-----SFCGEDVGGYF 148
>03_05_0024 -
19934529-19935298,19935359-19935871,19936147-19936635,
19936738-19937044,19937104-19937130
Length = 701
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = -3
Query: 574 PVTSTSARKPQGTTTPPYCHLSYRRVSLGACEHGP-REQEGSVDPSARSSSPVLVARRFH 398
PV S S P G+ PP Y + SL G R G V+ S S + R
Sbjct: 161 PVNSASVCTPTGSRVPPLRSQDYHQPSLSVAASGSNRRSRGHVERSVHSPADRHRERHAE 220
Query: 397 SPYS 386
P S
Sbjct: 221 QPRS 224
>06_03_1297 +
29110432-29110542,29110613-29110804,29110893-29110976,
29111115-29111191,29111410-29111476,29111640-29111697,
29111823-29111890,29111981-29112043,29112549-29112651,
29112685-29112845,29112934-29113053,29113300-29113356,
29113646-29113809,29113896-29114055,29114720-29114803,
29115074-29115196,29115368-29115498,29115577-29115658,
29115876-29115963,29116143-29116186,29116264-29116387,
29116450-29116537,29116649-29116849,29116894-29117104,
29117383-29117454,29117587-29117790,29117959-29118087
Length = 1021
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -2
Query: 680 RLERGRLVPPRHELSFGDTLKNPPTSEPQKLFPAIASDKHIGTEAAR 540
RLE G + P +SFG L N + KL + DK I E AR
Sbjct: 552 RLENGGMEPVVQIVSFGSELSNRSPTFDMKLSDLMDVDKPISYEKAR 598
>11_01_0349 -
2614682-2614721,2614881-2614955,2615346-2615538,
2615654-2616287
Length = 313
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 675 GTRPPGTTSS*AQLRGYFEESSDVRTAETVPGYCQ 571
G P T++ A + GY + S VP YC+
Sbjct: 243 GPEPEADTTAAATMYGYMHQQSSYAAMSAVPSYCR 277
>10_03_0002 - 6858257-6861205
Length = 982
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = -3
Query: 574 PVTSTSARKPQGTTTPPYCHLSYRRVSLGACEHGP-REQEGSVDPSARSSSPVLVARRFH 398
PV S S R P G+ P + YR SL G R G + S S RR
Sbjct: 323 PVNSESVRTPTGSRVPHFRSHDYRHPSLSITGAGSNRRSRGHDERSVHSPPDHHRERRVE 382
Query: 397 SPYS 386
P S
Sbjct: 383 RPRS 386
>01_06_1365 - 36690267-36692222
Length = 651
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/73 (23%), Positives = 28/73 (38%)
Frame = -2
Query: 674 ERGRLVPPRHELSFGDTLKNPPTSEPQKLFPAIASDKHIGTEAARNDHSAVLSPVLPQSI 495
+RGR+ + PP P+ P D+ I ++ V+ PV+
Sbjct: 142 DRGRVPSSSSAADIAPPHQQPPPPPPRPFIPDDFLDEDIPVVMEHDEIMPVVEPVIVVDT 201
Query: 494 SGCLRTRPS*AGR 456
SG + T P+ R
Sbjct: 202 SGEIETEPNVVAR 214
>10_08_0533 + 18592177-18592581,18592674-18593906
Length = 545
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 339 GLEGLAAYWEHRHVHNEYGLWNLRAT---NTGLLDRADGSTDPSCSRG 473
G E WE +HV+++ L NL T GL+++A+ D +G
Sbjct: 377 GAEKAYEEWESKHVYHDSRLINLLLTAYCKEGLMEKAEALVDQFVKKG 424
>06_01_0120 -
926226-926289,926821-926887,927122-927170,927257-927313,
927826-927897,928145-928236,928331-928403,928870-928944,
929207-929314,929372-929422,929834-929959,930324-930362,
930452-930535,931018-931109,931217-931300,931410-931524
Length = 415
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 692 PGKNRLERGRLVPPRHELSFGDTLKNPPTSEP--QKLFPAIASDKHIGTE 549
PG+ + RG+ + R+ +GD + + P LFPAI + K GTE
Sbjct: 363 PGQKVVLRGKGIKTRNSSYYGDQYVHFNVNIPAFSILFPAILAGKDTGTE 412
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 475 RVRRHPEILCGRTGDNTAE 531
RV R+P++LC + GD+ AE
Sbjct: 417 RVARNPKLLCSKVGDDHAE 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,829,691
Number of Sequences: 37544
Number of extensions: 455899
Number of successful extensions: 1409
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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