Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30401
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              60   2e-09
SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              47   2e-05
SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)                    32   0.52 
SB_19719| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)             31   0.90 
SB_6258| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)            29   2.8  
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)            29   4.8  
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)               28   6.4  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            28   6.4  
SB_17803| Best HMM Match : SRCR (HMM E-Value=0)                        28   6.4  
SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)                  28   8.4  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               28   8.4  
SB_34353| Best HMM Match : DUF1127 (HMM E-Value=0.46)                  28   8.4  
SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)                   28   8.4  

>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/38 (68%), Positives = 29/38 (76%)
 Frame = +1

Query: 511 TGDNTAEWSFLAASVPMCLSLAIAGNSFCGSDVGGFFK 624
           TGDN AEWS L AS+PM LSL + G  F G+DVGGFFK
Sbjct: 536 TGDNMAEWSHLKASIPMILSLGVTGLPFAGADVGGFFK 573



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 30/64 (46%), Positives = 38/64 (59%)
 Frame = +3

Query: 267 EPSVFNGPEVTMPKDCRHYKPPQDGLEGLAAYWEHRHVHNEYGLWNLRATNTGLLDRADG 446
           +PSVF+GPE+TM KD  HY             WEHR VHN YG++  +ATN GL+ R+ G
Sbjct: 465 KPSVFHGPEITMHKDTIHYGD-----------WEHRDVHNIYGMYFHKATNLGLIQRSGG 513

Query: 447 STDP 458
              P
Sbjct: 514 KDRP 517



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 452 RPFLLTRAVFAGTQRYSAV 508
           RPF+L+RA FAGTQRY  +
Sbjct: 516 RPFVLSRAFFAGTQRYGPI 534


>SB_27817| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 388

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 25  VVIVDPHIKR-EPG--YFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDFFNPVVSRY 195
           + IVDP I   +P   Y  + D   +G +V   +G    G  WPG++ YPDFFNP    Y
Sbjct: 50  IPIVDPGISNTQPSGSYPPYSDGLAMGVFVNASNGGPIVGQVWPGNTVYPDFFNPSTQSY 109

Query: 196 YS 201
           ++
Sbjct: 110 WT 111



 Score = 31.9 bits (69), Expect = 0.52
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 514 GDNTAEWSFLAASVPMCLSLAIAGNSFCGSDVGGF 618
           GDN A W  +  SVP  L++ + G    G+D+ GF
Sbjct: 226 GDNQATWESMYLSVPGILNMNMFGIPLVGADICGF 260


>SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)
          Length = 1020

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 100 YVKDRDGKDYEGWCWPGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVH 249
           Y+KD    +Y   C   +S YP   N V  R+ +   R   +PGTS+ VH
Sbjct: 434 YIKDIGIPEYYQPCTSKTSEYPGIINLVHQRHRNT--RTSKYPGTSRLVH 481



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 100 YVKDRDGKDYEGWCWPGSSSYPDFFNPVVSRYYSDRYRFENFPGTSKDVH 249
           Y+KD    +Y   C   +S YP   N V  R+ +   R   +PGT   VH
Sbjct: 374 YIKDIGIPEYYQPCTLKTSKYPGIINLVRQRHRNT--RTSEYPGTINLVH 421


>SB_19719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 430 WTAPTGLQTLPAHEGRVRRHPEILCGRTGDNTAEWS 537
           W    GL      +GR  RHP++  GR   +   WS
Sbjct: 24  WEVRGGLSERTTDKGRAHRHPDVSTGRNSPSYPHWS 59


>SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)
          Length = 774

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 49  KREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDFFN 177
           +REPG+  ++D    GY    R  +D+ G     S S+PDF +
Sbjct: 126 QREPGFEFYDDVAPRGYNPFKRGLQDFVGGRNNSSFSHPDFLD 168


>SB_6258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 502 RVSLGACEHGPREQEGSVDPSAR--SSSPVLVARRFHSPYSLCTCLCSQ*AASPSRPSW 332
           R+++   EHGP E+  +++P       + +++  + H+P       C+Q   SP +  W
Sbjct: 14  RMAIVPKEHGPWEKRMAIEPKEHCPQGTRMVIVPKEHAPQGKGNGYCTQGRWSPGKRGW 72


>SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)
          Length = 498

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 662 LVPPRHELSFGDTLKNPPTSEPQKLFPAIASDKHI---GTEAARNDHSAVLSPVLPQSIS 492
           L PP+   +F  +   PP SE Q+     A +  I   GT  + ++HSA LS     S S
Sbjct: 98  LYPPKSSATFTSSSCKPPESETQEFQEKNALEARISGEGTPISMSNHSASLSSSTASSSS 157


>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
          Length = 703

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +3

Query: 243 RPPVNDMNEPSVFNG---PEVTMPKDCRHYKPPQD 338
           RP  ND+N P + N    P V  P     Y PP++
Sbjct: 558 RPSTNDLNSPQLVNTAMVPIVISPSSSETYSPPRE 592


>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
          Length = 1176

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 545 ARNDHSAVLSPVLPQSISGC 486
           +RN  SA +SPV+PQ  +GC
Sbjct: 284 SRNSGSAQISPVMPQEEAGC 303


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127  YEGWCWPGSSSYPDFFNP-VVSRYYSDRYR 213
            Y+G+  P   +YP ++ P    RYY + YR
Sbjct: 1301 YQGYGMPSPYNYPGYYPPDYYQRYYEEYYR 1330


>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1428

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 502  RVSLGACEHGPREQEGSV-DPSARSSSPVLVARRFHSPYSLCTCLCSQ*AASPSRPSW 332
            R S G  E   R + GSV D + R  +  ++ R    P +L    CS+   SPSR  W
Sbjct: 858  RESEGRVELFHRGEWGSVCDDNWRIRNGHVICRHLGYPRALSVSCCSEFGISPSRRIW 915


>SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)
          Length = 1032

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 541 GTTTPPYCHLSYRRVSLGACEHGPREQEGSVDPSARSSSPVLVARRFHSPYS 386
           GT  P    L+  ++++  CE  P E E   D     S+PV  A+   +P S
Sbjct: 432 GTKLPLQTCLTNSKMNIKDCETEPDEDEAEPDEDETISNPVEPAQESSNPTS 483


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 611 EDSSKYPRS*AHDEVVPGGRVPSGSFRG 694
           E+   Y     H+E +P GR   GSFRG
Sbjct: 361 EEQEAYEDGRYHEEFIPQGRRSRGSFRG 388


>SB_34353| Best HMM Match : DUF1127 (HMM E-Value=0.46)
          Length = 243

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 31  IVDPHIKREPGYFLHEDATELGYYVKDRDGKDYEGWCWPGSSSYPDFFNPVVSRYYSDRY 210
           IV P    EP  +   D       ++D+         +P + S+ ++F  + S  + D+Y
Sbjct: 90  IVKPKADPEPNLYHRYDIVRY-LIIEDKPIAFLSNTTFPATLSWSNYF--LSSVCFEDQY 146

Query: 211 RFENFP 228
           RFEN P
Sbjct: 147 RFENTP 152


>SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)
          Length = 856

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 100 YVKDRDGKDYEGWCWPGSSSYPDFFNPVVSRYYSDRYRF 216
           Y+KD     Y   C   +S YP   NPV  R+ + R +F
Sbjct: 806 YIKDIGIPGYYQPCTSKTSEYPGTINPVHRRHRNTRVQF 844


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,679,046
Number of Sequences: 59808
Number of extensions: 482872
Number of successful extensions: 1370
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)